-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2655

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 201, 351
Couldn't classify 915, 1109
Sorry, prediction snap_scaffold_2655-snap.1-T1 fails validation.
(GTG)	 AG	201-351	GT	AGG
(GCA)	 AG	512-653	GT	AGG
(GGG)	 AG	915-1109	GT	GGG
add_exon() Sorry, snap_scaffold_2655-snap.1-T1 201-351-terminal-3 is invalid.
-recovered snap_scaffold_2655-snap.1-T1, terminal, 201, 351
-recovered snap_scaffold_2655-snap.1-T1, internal, 201, 351
-recovered snap_scaffold_2655-snap.1-T1, internal, 512, 653
-recovered snap_scaffold_2655-snap.1-T1, internal, 915, 1109
Couldn't classify 201, 351
Sorry, prediction Augustus_model.g42142.t1 fails validation.
(GTG)	 AG	201-351	GT	AGG
(GCA)	 AG	512-653	GT	AGG
(GGG)	 AG	915-1113	GA	GAG
add_exon() Sorry, Augustus_model.g42142.t1 201-351-terminal-3 is invalid.
-recovered Augustus_model.g42142.t1, terminal, 201, 351
-recovered Augustus_model.g42142.t1, terminal, 915, 1113
-recovered Augustus_model.g42142.t1, internal, 201, 351
-recovered Augustus_model.g42142.t1, internal, 512, 653
Valid prediction for GlimmerHMM_glimmerT_63178-T1
Couldn't classify 201, 351
Couldn't classify 915, 1109
Sorry, prediction GeneMark_model.110500_t fails validation.
(GTG)	 AG	201-351	GT	AGG
(GCA)	 AG	512-653	GT	AGG
(ATC)	 AG	824-889	GT	ACG
(GGG)	 AG	915-1109	GT	GGG
add_exon() Sorry, GeneMark_model.110500_t 201-351-terminal-3 is invalid.
-recovered GeneMark_model.110500_t, terminal, 201, 351
-recovered GeneMark_model.110500_t, internal, 201, 351
-recovered GeneMark_model.110500_t, internal, 512, 653
-recovered GeneMark_model.110500_t, internal, 824, 889
-recovered GeneMark_model.110500_t, internal, 915, 1109

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1159
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support