-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2653

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2653-snap.1-T1
Couldn't classify 44, 58
Sorry, prediction GeneMark_model.110498_t fails validation.
(CAG)	 AG	44-58	GT	GGG
(AGG)	 AG	83-91	GT	AAG
(AGA)	 AG	216-329	GT	GTG
(GAT)	 AG	353-391	GT	GTG
(ATG)	 AG	416-581	AG	AGA
-recovered GeneMark_model.110498_t, terminal, 416, 581
-recovered GeneMark_model.110498_t, internal, 44, 58
-recovered GeneMark_model.110498_t, internal, 83, 91
-recovered GeneMark_model.110498_t, internal, 216, 329
-recovered GeneMark_model.110498_t, internal, 353, 391

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 81, 224
Sorry, prediction GeneMark_model.110499_t fails validation.
(TGG)	 AG	81-224	GT	AGG
(GAG)	 AG	256-300	GT	AAG
(GAG)	 AG	328-366	GT	AAG
(GCG)	 AG	389-427	GT	AAG
(GAA)	 AG	458-476	AG	GAA
-recovered GeneMark_model.110499_t, terminal, 458, 476
-recovered GeneMark_model.110499_t, internal, 81, 224
-recovered GeneMark_model.110499_t, internal, 256, 300
-recovered GeneMark_model.110499_t, internal, 328, 366
-recovered GeneMark_model.110499_t, internal, 389, 427
Couldn't classify 129, 427
Sorry, prediction snap_scaffold_2653-snap.2-T1 fails validation.
(ACT)	 AG	129-427	GT	AAG
-recovered snap_scaffold_2653-snap.2-T1, internal, 129, 427
Valid prediction for GlimmerHMM_glimmerT_63177-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1160
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support