-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2652

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 134
Sorry, prediction GeneMark_model.110496_t fails validation.
(GGT)	 AG	34-134	GT	GAG
(GGC)	 AG	163-400	AG	AGA
-recovered GeneMark_model.110496_t, terminal, 163, 400
-recovered GeneMark_model.110496_t, internal, 34, 134
Couldn't classify 1, 141
Sorry, prediction Augustus_model.g42141.t1 fails validation.
(GAC)	 TA	1-141	GT	GGG
(CGT)	 AG	391-555	AC	AAA
-recovered Augustus_model.g42141.t1, terminal, 391, 555
Couldn't classify 804, 839
Sorry, prediction GeneMark_model.110497_t fails validation.
(ATG)	 GG	433-525	GT	AAG
(GAG)	 AG	804-839	GT	TGG
-recovered GeneMark_model.110497_t, initial, 433, 525
-recovered GeneMark_model.110497_t, internal, 804, 839

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2652-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1160
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support