-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2649

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 704, 769
Couldn't classify 858, 956
Sorry, prediction GeneMark_model.110495_t fails validation.
(ACG)	 AG	704-769	GT	TAG
(CCC)	 AG	810-816	GT	GTG
(GCG)	 AG	858-956	GT	ACG
-recovered GeneMark_model.110495_t, internal, 704, 769
-recovered GeneMark_model.110495_t, internal, 810, 816
-recovered GeneMark_model.110495_t, internal, 858, 956
Valid prediction for GlimmerHMM_glimmerT_63176-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63176-T1 810-960-terminal-1 is invalid.
Couldn't classify 704, 769
Sorry, prediction snap_scaffold_2649-snap.1-T1 fails validation.
(ACG)	 AG	704-769	GT	TAG
(CCC)	 AG	810-960	AG	AGA
-recovered snap_scaffold_2649-snap.1-T1, terminal, 810, 960
-recovered snap_scaffold_2649-snap.1-T1, internal, 704, 769
Valid prediction for Augustus_model.g42140.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1161
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support