-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2648

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 68, 277
Sorry, prediction GeneMark_model.110493_t fails validation.
(GCT)	 AG	68-277	GT	ACG
(GGA)	 AG	528-545	AG	GAA
-recovered GeneMark_model.110493_t, terminal, 528, 545
-recovered GeneMark_model.110493_t, internal, 68, 277
Couldn't classify 68, 277
Couldn't classify 786, 887
Sorry, prediction snap_scaffold_2648-snap.1-T1 fails validation.
(GCT)	 AG	68-277	GT	ACG
(GCA)	 AG	786-887	GT	TGG
-recovered snap_scaffold_2648-snap.1-T1, internal, 68, 277
-recovered snap_scaffold_2648-snap.1-T1, internal, 786, 887
Couldn't classify 786, 887
Sorry, prediction GlimmerHMM_glimmerT_63175-T1 fails validation.
(ATG)	 AG	80-277	GT	ACG
(GCA)	 AG	786-887	GT	TGG
-recovered GlimmerHMM_glimmerT_63175-T1, initial, 80, 277
-recovered GlimmerHMM_glimmerT_63175-T1, internal, 80, 277
-recovered GlimmerHMM_glimmerT_63175-T1, internal, 786, 887
Couldn't classify 68, 277
Couldn't classify 786, 887
Sorry, prediction Augustus_model.g42139.t1 fails validation.
(GCT)	 AG	68-277	GT	ACG
(GCA)	 AG	786-887	GT	TGG
-recovered Augustus_model.g42139.t1, internal, 68, 277
-recovered Augustus_model.g42139.t1, internal, 786, 887

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 125
Sorry, prediction GeneMark_model.110494_t fails validation.
(GAG)	 AG	33-125	GT	GAG
(GAA)	 AG	404-430	GT	GGG
(GGG)	 AG	451-522	GT	AGG
(GGG)	 AG	573-588	CA	AGC
-recovered GeneMark_model.110494_t, terminal, 573, 588
-recovered GeneMark_model.110494_t, internal, 33, 125
-recovered GeneMark_model.110494_t, internal, 404, 430
-recovered GeneMark_model.110494_t, internal, 451, 522

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1161
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support