-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2643

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1, 169
Couldn't classify 581, 641
Sorry, prediction Augustus_model.g42138.t1 fails validation.
(CCC)	 GA	1-169	GT	AAG
(GTA)	 AG	257-364	GT	CAG
(GGA)	 AG	581-641	GT	AGG
-recovered Augustus_model.g42138.t1, internal, 257, 364
-recovered Augustus_model.g42138.t1, internal, 581, 641
Couldn't classify 39, 169
Couldn't classify 581, 680
Sorry, prediction GeneMark_model.110491_t fails validation.
(GGT)	 AG	39-169	GT	AAG
(GTA)	 AG	257-364	GT	CAG
(GGA)	 AG	581-680	GT	AGG
-recovered GeneMark_model.110491_t, internal, 39, 169
-recovered GeneMark_model.110491_t, internal, 257, 364
-recovered GeneMark_model.110491_t, internal, 581, 680
Couldn't classify 39, 169
Sorry, prediction snap_scaffold_2643-snap.1-T1 fails validation.
(GGT)	 AG	39-169	GT	AAG
(GTA)	 AG	257-364	GT	CAG
(GGA)	 AG	581-692	GC	AGG
-recovered snap_scaffold_2643-snap.1-T1, terminal, 581, 692
-recovered snap_scaffold_2643-snap.1-T1, internal, 39, 169
-recovered snap_scaffold_2643-snap.1-T1, internal, 257, 364
-recovered snap_scaffold_2643-snap.1-T1, internal, 581, 692
Valid prediction for GlimmerHMM_glimmerT_63172-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1163
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support