-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2642

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 261, 323
Couldn't classify 933, 1046
Sorry, prediction GeneMark_model.110490_t fails validation.
(GAG)	 AG	261-323	GT	GAG
(GAC)	 AG	381-452	GT	CTG
(GCA)	 AG	659-718	GT	AGG
(AGA)	 AG	747-761	GC	GAG
(AGA)	 AG	785-877	GC	GAG
(CGA)	 AG	901-909	GC	GAG
(CGA)	 AG	933-1046	GT	TCG
-recovered GeneMark_model.110490_t, internal, 261, 323
-recovered GeneMark_model.110490_t, internal, 381, 452
-recovered GeneMark_model.110490_t, internal, 659, 718
-recovered GeneMark_model.110490_t, internal, 747, 761
-recovered GeneMark_model.110490_t, internal, 785, 877
-recovered GeneMark_model.110490_t, internal, 901, 909
-recovered GeneMark_model.110490_t, internal, 933, 1046

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1163
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support