-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_264

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2428, 2806
Couldn't classify 8309, 8510
Sorry, prediction snap_scaffold_264-snap.2-T1 fails validation.
(TGT)	 AG	2428-2806	GT	ATG
(CTG)	 AG	5916-6070	GT	AAG
(AGA)	 AG	6876-7149	GT	GGG
(AGG)	 AG	8138-8286	GT	TGG
(AGC)	 AG	8309-8510	GT	CGG
-recovered snap_scaffold_264-snap.2-T1, internal, 2428, 2806
-recovered snap_scaffold_264-snap.2-T1, internal, 5916, 6070
-recovered snap_scaffold_264-snap.2-T1, internal, 6876, 7149
-recovered snap_scaffold_264-snap.2-T1, internal, 8138, 8286
-recovered snap_scaffold_264-snap.2-T1, internal, 8309, 8510
Valid prediction for GlimmerHMM_glimmerT_61599-T1
Valid prediction for GeneMark_model.107121_t
Couldn't classify 8402, 8440
Sorry, prediction GeneMark_model.107122_t fails validation.
(ATG)	 GG	8158-8192	GT	GGG
(GGA)	 AG	8233-8286	GT	TGG
(CAT)	 AG	8311-8376	GT	GTG
(AGA)	 AG	8402-8440	GT	GGG
-recovered GeneMark_model.107122_t, initial, 8158, 8192
-recovered GeneMark_model.107122_t, internal, 8233, 8286
-recovered GeneMark_model.107122_t, internal, 8311, 8376
-recovered GeneMark_model.107122_t, internal, 8402, 8440

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7971, 8135
Sorry, prediction GeneMark_model.107120_t fails validation.
(ATG)	 TC	2235-2266	GT	CAG
(GAG)	 AG	2365-2409	GT	ATG
(GAG)	 AG	2444-2541	GT	GGG
(GGA)	 AG	2567-2639	GC	GGG
(GGG)	 AG	2675-2725	GT	GAG
(TGC)	 AG	2749-2810	GT	ATG
(TGA)	 AG	4017-4095	GT	CAG
(GAG)	 AG	4120-4125	GT	CAG
(TGG)	 AG	4151-4309	GT	CTG
(AGG)	 AG	4332-4424	GT	CAG
(AGA)	 AG	6457-6654	GT	AGG
(TAA)	 AG	6721-6807	GT	GGG
(AGG)	 AG	6845-6871	GT	CTG
(AAA)	 AG	6932-7000	GT	CAG
(AGA)	 AG	7030-7143	GT	TGG
(GAA)	 AG	7166-7207	GT	GAG
(AGA)	 AG	7945-7950	GT	GGG
(GGT)	 AG	7971-8135	GT	GAG
-recovered GeneMark_model.107120_t, initial, 2235, 2266
-recovered GeneMark_model.107120_t, terminal, 2675, 2725
-recovered GeneMark_model.107120_t, internal, 2365, 2409
-recovered GeneMark_model.107120_t, internal, 2444, 2541
-recovered GeneMark_model.107120_t, internal, 2567, 2639
-recovered GeneMark_model.107120_t, internal, 2675, 2725
-recovered GeneMark_model.107120_t, internal, 2749, 2810
-recovered GeneMark_model.107120_t, internal, 4017, 4095
-recovered GeneMark_model.107120_t, internal, 4120, 4125
-recovered GeneMark_model.107120_t, internal, 4151, 4309
-recovered GeneMark_model.107120_t, internal, 4332, 4424
-recovered GeneMark_model.107120_t, internal, 6457, 6654
-recovered GeneMark_model.107120_t, internal, 6721, 6807
-recovered GeneMark_model.107120_t, internal, 6845, 6871
-recovered GeneMark_model.107120_t, internal, 6932, 7000
-recovered GeneMark_model.107120_t, internal, 7030, 7143
-recovered GeneMark_model.107120_t, internal, 7166, 7207
-recovered GeneMark_model.107120_t, internal, 7945, 7950
-recovered GeneMark_model.107120_t, internal, 7971, 8135
Couldn't classify 744, 824
Sorry, prediction GlimmerHMM_glimmerT_61600-T1 fails validation.
(GAG)	 AG	744-824	GT	AGG
(CCA)	 AG	2044-2064	GC	GAG
-recovered GlimmerHMM_glimmerT_61600-T1, terminal, 2044, 2064
-recovered GlimmerHMM_glimmerT_61600-T1, internal, 744, 824
-recovered GlimmerHMM_glimmerT_61600-T1, internal, 2044, 2064
Couldn't classify 744, 824
Couldn't classify 6764, 6880
Sorry, prediction snap_scaffold_264-snap.1-T1 fails validation.
(GAG)	 AG	744-824	GT	AGG
(AGG)	 AG	2127-2409	GT	ATG
(TGA)	 AG	4097-4386	GT	GTG
(ACA)	 AG	6764-6880	GT	GGG
-recovered snap_scaffold_264-snap.1-T1, internal, 744, 824
-recovered snap_scaffold_264-snap.1-T1, internal, 2127, 2409
-recovered snap_scaffold_264-snap.1-T1, internal, 4097, 4386
-recovered snap_scaffold_264-snap.1-T1, internal, 6764, 6880

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8087, rend_intergenic: 2428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8830
-exon list size: 61


building trellis

1.6    
3.2    
4.8    
6.3    
7.9    
9.5    
11.1    
12.7    
14.3    
15.9    
17.5    
19.0    
20.6    
22.2    
23.8    
25.4    
27.0    
28.6    
30.2    
31.7    
33.3    
34.9    
36.5    
38.1    
39.7    
41.3    
42.9    
44.4    
46.0    
47.6    
49.2    
50.8    
52.4    
54.0    
55.6    
57.1    
58.7    
60.3    
61.9    
63.5    
65.1    
66.7    
68.3    
69.8    
71.4    
73.0    
74.6    
76.2    
77.8    
79.4    
81.0    
82.5    
84.1    
85.7    
87.3    
88.9    
90.5    
92.1    
93.7    
95.2    
96.8    
98.4    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 8087, rend_intergenic: 2428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support