-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2639

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 849, 1142
Sorry, prediction snap_scaffold_2639-snap.1-T1 fails validation.
(ATG)	 AG	481-560	GT	CTG
(GTG)	 AG	591-778	GT	GGG
(TCT)	 AG	849-1142	GT	AGG
-recovered snap_scaffold_2639-snap.1-T1, initial, 481, 560
-recovered snap_scaffold_2639-snap.1-T1, internal, 481, 560
-recovered snap_scaffold_2639-snap.1-T1, internal, 591, 778
-recovered snap_scaffold_2639-snap.1-T1, internal, 849, 1142
Couldn't classify 10, 45
Couldn't classify 1044, 1142
Sorry, prediction GeneMark_model.110488_t fails validation.
(AGG)	 AG	10-45	GT	GAG
(CCC)	 AG	624-721	GT	GCG
(CCG)	 AG	765-1008	GT	GGG
(GAG)	 AG	1044-1142	GT	AGG
-recovered GeneMark_model.110488_t, internal, 10, 45
-recovered GeneMark_model.110488_t, internal, 624, 721
-recovered GeneMark_model.110488_t, internal, 765, 1008
-recovered GeneMark_model.110488_t, internal, 1044, 1142

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42137.t1
Valid prediction for GlimmerHMM_glimmerT_63171-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1164
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support