-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2638

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63170-T1
Couldn't classify 182, 270
Sorry, prediction Augustus_model.g42136.t1 fails validation.
(CCT)	 AG	182-270	GT	GAG
(CTC)	 AG	428-567	GT	TTG
(GCT)	 AG	845-1129	AC	AGA
-recovered Augustus_model.g42136.t1, terminal, 845, 1129
-recovered Augustus_model.g42136.t1, internal, 182, 270
-recovered Augustus_model.g42136.t1, internal, 428, 567
Couldn't classify 36, 86
Couldn't classify 845, 1121
Sorry, prediction GeneMark_model.110487_t fails validation.
(GGG)	 AG	36-86	GT	AGG
(CCT)	 AG	182-270	GT	GAG
(CTC)	 AG	428-567	GT	TTG
(GCT)	 AG	845-1121	GT	CGG
-recovered GeneMark_model.110487_t, internal, 36, 86
-recovered GeneMark_model.110487_t, internal, 182, 270
-recovered GeneMark_model.110487_t, internal, 428, 567
-recovered GeneMark_model.110487_t, internal, 845, 1121
Couldn't classify 180, 270
Couldn't classify 845, 1120
Sorry, prediction pasa_asmbl_35894.p1 fails validation.
(AGC)	 TC	180-270	GT	GAG
(CTC)	 AG	428-567	GT	TTG
(GCT)	 AG	845-1120	GG	ACG
-recovered pasa_asmbl_35894.p1, internal, 428, 567
Couldn't classify 182, 270
Couldn't classify 845, 1121
Sorry, prediction snap_scaffold_2638-snap.1-T1 fails validation.
(CCT)	 AG	182-270	GT	GAG
(CTC)	 AG	428-567	GT	TTG
(GCT)	 AG	845-1121	GT	CGG
-recovered snap_scaffold_2638-snap.1-T1, internal, 182, 270
-recovered snap_scaffold_2638-snap.1-T1, internal, 428, 567
-recovered snap_scaffold_2638-snap.1-T1, internal, 845, 1121

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1165
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support