-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2635

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 962, 977
Sorry, prediction GeneMark_model.110484_t fails validation.
(ATG)	 AG	185-189	GT	ATG
(GAG)	 AG	324-335	GT	AGG
(GGG)	 AG	359-397	GT	AGG
(ATC)	 AG	741-755	GT	GGG
(ACA)	 AG	790-828	GT	GAG
(TAC)	 AG	851-865	GT	AGG
(GAG)	 AG	888-902	GT	AGG
(GGT)	 AG	962-977	GT	AGG
-recovered GeneMark_model.110484_t, initial, 185, 189
-recovered GeneMark_model.110484_t, internal, 185, 189
-recovered GeneMark_model.110484_t, internal, 324, 335
-recovered GeneMark_model.110484_t, internal, 359, 397
-recovered GeneMark_model.110484_t, internal, 741, 755
-recovered GeneMark_model.110484_t, internal, 790, 828
-recovered GeneMark_model.110484_t, internal, 851, 865
-recovered GeneMark_model.110484_t, internal, 888, 902
-recovered GeneMark_model.110484_t, internal, 962, 977

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110483_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1167
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support