-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2632

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 50, 94
Couldn't classify 1053, 1156
Sorry, prediction GeneMark_model.110480_t fails validation.
(AGC)	 AG	50-94	GT	CTG
(AGA)	 AG	202-225	GT	GGG
(AGA)	 AG	273-320	GT	AGG
(ACA)	 AG	344-370	GT	AAG
(AGA)	 AG	398-472	GT	GAG
(ACA)	 AG	1053-1156	GC	CAG
-recovered GeneMark_model.110480_t, internal, 50, 94
-recovered GeneMark_model.110480_t, internal, 202, 225
-recovered GeneMark_model.110480_t, internal, 273, 320
-recovered GeneMark_model.110480_t, internal, 344, 370
-recovered GeneMark_model.110480_t, internal, 398, 472
-recovered GeneMark_model.110480_t, internal, 1053, 1156

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63168-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63168-T1 503-690-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1168
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support