-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2629

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63167-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63167-T1 313-688-terminal-1 is invalid.
Couldn't classify 355, 387
Couldn't classify 1135, 1159
Sorry, prediction GeneMark_model.110478_t fails validation.
(ACC)	 AG	355-387	GT	CTG
(ACA)	 AG	409-630	GT	ACG
(AGA)	 AG	652-684	GT	CTG
(AGA)	 AG	709-714	GT	CTG
(AGA)	 AG	739-744	GT	CTG
(GAA)	 AG	768-779	GT	CTG
(GAA)	 AG	803-814	GT	CTG
(AGA)	 AG	839-844	GT	CTG
(AGA)	 AG	872-916	GT	GAG
(AGA)	 AG	944-949	GT	CTG
(GAA)	 AG	973-999	GT	AAG
(GAG)	 AG	1020-1070	GT	GAG
(AGA)	 AG	1096-1110	GT	GAG
(CAT)	 AG	1135-1159	GT	TCG
-recovered GeneMark_model.110478_t, internal, 355, 387
-recovered GeneMark_model.110478_t, internal, 409, 630
-recovered GeneMark_model.110478_t, internal, 652, 684
-recovered GeneMark_model.110478_t, internal, 709, 714
-recovered GeneMark_model.110478_t, internal, 739, 744
-recovered GeneMark_model.110478_t, internal, 768, 779
-recovered GeneMark_model.110478_t, internal, 803, 814
-recovered GeneMark_model.110478_t, internal, 839, 844
-recovered GeneMark_model.110478_t, internal, 872, 916
-recovered GeneMark_model.110478_t, internal, 944, 949
-recovered GeneMark_model.110478_t, internal, 973, 999
-recovered GeneMark_model.110478_t, internal, 1020, 1070
-recovered GeneMark_model.110478_t, internal, 1096, 1110
-recovered GeneMark_model.110478_t, internal, 1135, 1159
Valid prediction for snap_scaffold_2629-snap.1-T1
add_exon() Sorry, snap_scaffold_2629-snap.1-T1 313-818-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1169
-exon list size: 38


building trellis

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35.0    
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45.0    
47.5    
50.0    
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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support