-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2626

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2626-snap.1-T1
add_exon() Sorry, snap_scaffold_2626-snap.1-T1 720-928-terminal-1 is invalid.
Couldn't classify 481, 549
Couldn't classify 1114, 1137
Sorry, prediction GeneMark_model.110476_t fails validation.
(AGG)	 AG	481-549	GT	ACG
(GAG)	 AG	739-828	GT	GAG
(GAG)	 AG	873-881	GT	AGG
(ACG)	 AG	917-976	GT	AGG
(GAG)	 AG	1001-1051	GT	AGG
(GAG)	 AG	1076-1093	GT	ACG
(TGA)	 AG	1114-1137	GT	AGG
-recovered GeneMark_model.110476_t, internal, 481, 549
-recovered GeneMark_model.110476_t, internal, 739, 828
-recovered GeneMark_model.110476_t, internal, 873, 881
-recovered GeneMark_model.110476_t, internal, 917, 976
-recovered GeneMark_model.110476_t, internal, 1001, 1051
-recovered GeneMark_model.110476_t, internal, 1076, 1093
-recovered GeneMark_model.110476_t, internal, 1114, 1137
Valid prediction for GlimmerHMM_glimmerT_63166-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63166-T1 717-928-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1169
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support