-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2624

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 45, 125
Couldn't classify 1124, 1144
Sorry, prediction GeneMark_model.110474_t fails validation.
(TTG)	 AG	45-125	GT	TGG
(GCT)	 AG	246-304	GT	GGG
(ACA)	 AG	335-352	GC	AGG
(AAA)	 AG	377-523	GC	GAG
(GCA)	 AG	555-764	GT	GAG
(GTG)	 AG	792-821	GT	GGG
(TGA)	 AG	843-872	GT	CGG
(AGG)	 AG	894-926	GT	AGG
(GAG)	 AG	960-980	GT	GAG
(GAG)	 AG	1004-1036	GT	TGG
(GAG)	 AG	1061-1090	GT	AGG
(GAG)	 AG	1124-1144	GT	GAG
add_exon() Sorry, GeneMark_model.110474_t 555-764-terminal-1 is invalid.
-recovered GeneMark_model.110474_t, terminal, 555, 764
-recovered GeneMark_model.110474_t, internal, 45, 125
-recovered GeneMark_model.110474_t, internal, 246, 304
-recovered GeneMark_model.110474_t, internal, 335, 352
-recovered GeneMark_model.110474_t, internal, 377, 523
-recovered GeneMark_model.110474_t, internal, 555, 764
-recovered GeneMark_model.110474_t, internal, 792, 821
-recovered GeneMark_model.110474_t, internal, 843, 872
-recovered GeneMark_model.110474_t, internal, 894, 926
-recovered GeneMark_model.110474_t, internal, 960, 980
-recovered GeneMark_model.110474_t, internal, 1004, 1036
-recovered GeneMark_model.110474_t, internal, 1061, 1090
-recovered GeneMark_model.110474_t, internal, 1124, 1144
Valid prediction for snap_scaffold_2624-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1170
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support