-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2621

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63165-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 188, 1096
Sorry, prediction snap_scaffold_2621-snap.1-T1 fails validation.
(GTA)	 AG	188-1096	GT	TCG
-recovered snap_scaffold_2621-snap.1-T1, internal, 188, 1096
Couldn't classify 10, 39
Couldn't classify 783, 1149
Sorry, prediction GeneMark_model.110473_t fails validation.
(GCA)	 AG	10-39	GT	GAG
(AGG)	 AG	64-75	GT	GAG
(AGA)	 AG	209-712	GT	TCG
(ACA)	 AG	783-1149	GC	CAG
-recovered GeneMark_model.110473_t, internal, 10, 39
-recovered GeneMark_model.110473_t, internal, 64, 75
-recovered GeneMark_model.110473_t, internal, 209, 712
-recovered GeneMark_model.110473_t, internal, 783, 1149

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1172
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support