-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2620

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 134
Couldn't classify 1128, 1146
Sorry, prediction GeneMark_model.110472_t fails validation.
(GGG)	 AG	9-134	GT	TGG
(GGG)	 AG	213-355	GC	GAG
(GGA)	 AG	385-411	GT	GAG
(CGA)	 AG	433-445	GT	GGG
(CTG)	 AG	970-1106	GC	GAG
(CGA)	 AG	1128-1146	GC	GAG
-recovered GeneMark_model.110472_t, internal, 9, 134
-recovered GeneMark_model.110472_t, internal, 213, 355
-recovered GeneMark_model.110472_t, internal, 385, 411
-recovered GeneMark_model.110472_t, internal, 433, 445
-recovered GeneMark_model.110472_t, internal, 970, 1106
-recovered GeneMark_model.110472_t, internal, 1128, 1146

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g42133.t1
Couldn't classify 84, 212
Sorry, prediction GlimmerHMM_glimmerT_63164-T1 fails validation.
(GCA)	 AG	84-212	GT	AGG
(TTC)	 AG	838-1002	AG	AAA
-recovered GlimmerHMM_glimmerT_63164-T1, terminal, 838, 1002
-recovered GlimmerHMM_glimmerT_63164-T1, internal, 84, 212
Couldn't classify 84, 212
Couldn't classify 838, 912
Sorry, prediction snap_scaffold_2620-snap.1-T1 fails validation.
(GCA)	 AG	84-212	GT	AGG
(TTC)	 AG	838-912	GT	AGG
-recovered snap_scaffold_2620-snap.1-T1, internal, 84, 212
-recovered snap_scaffold_2620-snap.1-T1, internal, 838, 912

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1172
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support