-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_262

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107119_t
Valid prediction for snap_scaffold_262-snap.2-T1
Valid prediction for Augustus_model.g40959.t1
Valid prediction for snap_scaffold_262-snap.1-T1
Couldn't classify 4062, 4547
Sorry, prediction GlimmerHMM_glimmerT_61598-T1 fails validation.
(ATG)	 GG	1235-1409	GT	CTG
(TTA)	 AG	4062-4547	GT	AGG
-recovered GlimmerHMM_glimmerT_61598-T1, initial, 1235, 1409
-recovered GlimmerHMM_glimmerT_61598-T1, internal, 4062, 4547
Couldn't classify 668, 1013
Couldn't classify 1185, 1294
Sorry, prediction pasa_asmbl_35891.p1 fails validation.
(AAG)	 GA	668-1013	GT	AGG
(CTG)	 AG	1185-1294	AG	ACA

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8857
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support