-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2617

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 218
Couldn't classify 567, 619
Sorry, prediction GeneMark_model.110468_t fails validation.
(AGA)	 AG	39-218	GT	CGG
(ACC)	 AG	567-619	GT	GGG
-recovered GeneMark_model.110468_t, internal, 39, 218
-recovered GeneMark_model.110468_t, internal, 567, 619

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 561, 672
Couldn't classify 887, 1005
Sorry, prediction snap_scaffold_2617-snap.1-T1 fails validation.
(GGT)	 AG	561-672	GT	AGG
(AGT)	 AG	887-1005	GT	TCG
-recovered snap_scaffold_2617-snap.1-T1, internal, 561, 672
-recovered snap_scaffold_2617-snap.1-T1, internal, 887, 1005
Couldn't classify 887, 1005
Sorry, prediction Augustus_model.g42130.t1 fails validation.
(ATG)	 AA	303-310	GT	AGG
(GGT)	 AG	561-672	GT	AGG
(AGT)	 AG	887-1005	GT	TCG
-recovered Augustus_model.g42130.t1, initial, 303, 310
-recovered Augustus_model.g42130.t1, internal, 561, 672
-recovered Augustus_model.g42130.t1, internal, 887, 1005

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1173
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support