-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2615

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 60
Couldn't classify 1110, 1125
Sorry, prediction GeneMark_model.110466_t fails validation.
(GTG)	 AG	34-60	GT	AGG
(GTG)	 AG	88-114	GT	AGG
(GCT)	 AG	150-242	GT	CTG
(GGG)	 AG	361-407	GT	GGG
(GTC)	 AG	726-762	GT	AGG
(TAT)	 AG	806-862	GT	AGG
(CAT)	 AG	902-964	GT	AGG
(TAT)	 AG	1008-1070	GT	AGG
(CAT)	 AG	1110-1125	GT	AGG
-recovered GeneMark_model.110466_t, internal, 34, 60
-recovered GeneMark_model.110466_t, internal, 88, 114
-recovered GeneMark_model.110466_t, internal, 150, 242
-recovered GeneMark_model.110466_t, internal, 361, 407
-recovered GeneMark_model.110466_t, internal, 726, 762
-recovered GeneMark_model.110466_t, internal, 806, 862
-recovered GeneMark_model.110466_t, internal, 902, 964
-recovered GeneMark_model.110466_t, internal, 1008, 1070
-recovered GeneMark_model.110466_t, internal, 1110, 1125

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1175
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support