-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2612

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 77
Couldn't classify 997, 1017
Sorry, prediction GeneMark_model.110464_t fails validation.
(GGT)	 AG	33-77	GT	GGG
(AGA)	 AG	95-103	GT	GAG
(AGA)	 AG	147-158	GT	AGG
(GGA)	 AG	267-275	GT	GGG
(AGA)	 AG	311-319	GT	GGG
(GGA)	 AG	353-358	GT	GGG
(AGG)	 AG	386-394	GT	GGG
(GGA)	 AG	424-432	GT	GGG
(AGA)	 AG	470-481	GT	AGG
(AAA)	 AG	527-535	GT	GGG
(AGA)	 AG	580-591	GT	AGG
(AGA)	 AG	635-646	GT	AGG
(AGA)	 AG	682-690	GT	GGG
(GGG)	 AG	726-734	GT	GGG
(AGA)	 AG	776-784	GT	GGG
(AGA)	 AG	808-822	GT	GGG
(GGT)	 AG	850-894	GT	GGG
(AGG)	 AG	924-932	GT	TGG
(GGG)	 AG	960-965	GT	AGG
(AAT)	 AG	997-1017	GT	ATG
-recovered GeneMark_model.110464_t, terminal, 147, 158
-recovered GeneMark_model.110464_t, terminal, 470, 481
-recovered GeneMark_model.110464_t, terminal, 580, 591
-recovered GeneMark_model.110464_t, terminal, 635, 646
-recovered GeneMark_model.110464_t, internal, 33, 77
-recovered GeneMark_model.110464_t, internal, 95, 103
-recovered GeneMark_model.110464_t, internal, 147, 158
-recovered GeneMark_model.110464_t, internal, 267, 275
-recovered GeneMark_model.110464_t, internal, 311, 319
-recovered GeneMark_model.110464_t, internal, 353, 358
-recovered GeneMark_model.110464_t, internal, 386, 394
-recovered GeneMark_model.110464_t, internal, 424, 432
-recovered GeneMark_model.110464_t, internal, 470, 481
-recovered GeneMark_model.110464_t, internal, 527, 535
-recovered GeneMark_model.110464_t, internal, 580, 591
-recovered GeneMark_model.110464_t, internal, 635, 646
-recovered GeneMark_model.110464_t, internal, 682, 690
-recovered GeneMark_model.110464_t, internal, 726, 734
-recovered GeneMark_model.110464_t, internal, 776, 784
-recovered GeneMark_model.110464_t, internal, 808, 822
-recovered GeneMark_model.110464_t, internal, 850, 894
-recovered GeneMark_model.110464_t, internal, 924, 932
-recovered GeneMark_model.110464_t, internal, 960, 965
-recovered GeneMark_model.110464_t, internal, 997, 1017

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1175
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support