-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2610

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 42, 50
Couldn't classify 1075, 1128
Sorry, prediction GeneMark_model.110462_t fails validation.
(AGT)	 AG	42-50	GT	CAG
(TGA)	 AG	74-118	GT	GAG
(TCA)	 AG	140-148	GT	GAG
(AGT)	 AG	176-190	GT	GAG
(AGT)	 AG	222-236	GT	GAG
(TAA)	 AG	268-300	GT	CAG
(AGT)	 AG	322-336	GT	GAG
(AGT)	 AG	368-376	GT	CAG
(AGT)	 AG	400-408	GT	CAG
(GGT)	 AG	1075-1128	GT	GAG
-recovered GeneMark_model.110462_t, internal, 42, 50
-recovered GeneMark_model.110462_t, internal, 74, 118
-recovered GeneMark_model.110462_t, internal, 140, 148
-recovered GeneMark_model.110462_t, internal, 176, 190
-recovered GeneMark_model.110462_t, internal, 222, 236
-recovered GeneMark_model.110462_t, internal, 268, 300
-recovered GeneMark_model.110462_t, internal, 322, 336
-recovered GeneMark_model.110462_t, internal, 368, 376
-recovered GeneMark_model.110462_t, internal, 400, 408
-recovered GeneMark_model.110462_t, internal, 1075, 1128

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1175
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support