-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2609

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2609-snap.1-T1
add_exon() Sorry, snap_scaffold_2609-snap.1-T1 194-584-terminal-1 is invalid.
Couldn't classify 19, 30
Couldn't classify 1125, 1131
Sorry, prediction GeneMark_model.110461_t fails validation.
(GGG)	 AG	19-30	GT	GGG
(GGT)	 AG	57-68	GT	GGG
(TGG)	 AG	905-973	GT	GAG
(GGG)	 AG	1000-1053	GT	GAG
(AGG)	 AG	1078-1101	GT	GAG
(AGA)	 AG	1125-1131	GT	GAG
-recovered GeneMark_model.110461_t, internal, 19, 30
-recovered GeneMark_model.110461_t, internal, 57, 68
-recovered GeneMark_model.110461_t, internal, 905, 973
-recovered GeneMark_model.110461_t, internal, 1000, 1053
-recovered GeneMark_model.110461_t, internal, 1078, 1101
-recovered GeneMark_model.110461_t, internal, 1125, 1131

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1175
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support