-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2608

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 160, 195
Couldn't classify 964, 1006
Sorry, prediction GeneMark_model.110460_t fails validation.
(GAT)	 AG	160-195	GC	AGG
(TAA)	 AG	216-224	GC	AGG
(AGG)	 AG	247-261	GT	GAG
(TAA)	 AG	298-318	GC	AGG
(GAA)	 AG	405-629	GT	AGG
(GAT)	 AG	672-770	GT	AGG
(GCA)	 AG	856-867	GT	AGG
(GTG)	 AG	890-907	GT	AGG
(GAG)	 AG	933-938	GT	AAG
(ATT)	 AG	964-1006	GT	ACG
-recovered GeneMark_model.110460_t, internal, 160, 195
-recovered GeneMark_model.110460_t, internal, 216, 224
-recovered GeneMark_model.110460_t, internal, 247, 261
-recovered GeneMark_model.110460_t, internal, 298, 318
-recovered GeneMark_model.110460_t, internal, 405, 629
-recovered GeneMark_model.110460_t, internal, 672, 770
-recovered GeneMark_model.110460_t, internal, 856, 867
-recovered GeneMark_model.110460_t, internal, 890, 907
-recovered GeneMark_model.110460_t, internal, 933, 938
-recovered GeneMark_model.110460_t, internal, 964, 1006

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1176
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support