-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2607

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63160-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63160-T1 871-1087-terminal-1 is invalid.
Valid prediction for snap_scaffold_2607-snap.1-T1
add_exon() Sorry, snap_scaffold_2607-snap.1-T1 871-1087-terminal-1 is invalid.
Couldn't classify 649, 718
Couldn't classify 871, 972
Sorry, prediction GeneMark_model.110459_t fails validation.
(CAG)	 AG	649-718	GT	CAG
(AGC)	 AG	871-972	GT	CTG
-recovered GeneMark_model.110459_t, internal, 649, 718
-recovered GeneMark_model.110459_t, internal, 871, 972

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1176
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support