-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2601

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 85
Sorry, prediction GeneMark_model.110457_t fails validation.
(TGG)	 AG	43-85	GT	CAG
(AGA)	 AG	108-158	GT	AGG
(GTT)	 AG	475-530	GG	GAG
-recovered GeneMark_model.110457_t, terminal, 475, 530
-recovered GeneMark_model.110457_t, internal, 43, 85
-recovered GeneMark_model.110457_t, internal, 108, 158
Valid prediction for CodingQuarry_transcript_40369-T1
Couldn't classify 936, 1169
Sorry, prediction GeneMark_model.110456_t fails validation.
(ATG)	 AC	663-709	GT	CTG
(AGA)	 AG	936-1169	GT	ATG
-recovered GeneMark_model.110456_t, initial, 663, 709
-recovered GeneMark_model.110456_t, internal, 936, 1169

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1178
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support