-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107113_t
Valid prediction for GeneMark_model.107111_t
Couldn't classify 4756, 4824
Couldn't classify 6788, 7023
Sorry, prediction snap_scaffold_260-snap.1-T1 fails validation.
(GAA)	 AG	4756-4824	GT	CGG
(ACA)	 AG	5191-5529	GT	GGG
(GAG)	 AG	6015-6140	GT	GGG
(CCC)	 AG	6788-7023	GT	AGG
-recovered snap_scaffold_260-snap.1-T1, internal, 4756, 4824
-recovered snap_scaffold_260-snap.1-T1, internal, 5191, 5529
-recovered snap_scaffold_260-snap.1-T1, internal, 6015, 6140
-recovered snap_scaffold_260-snap.1-T1, internal, 6788, 7023
Valid prediction for Augustus_model.g40958.t1
Valid prediction for GeneMark_model.107114_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107112_t
Couldn't classify 1850, 2067
Sorry, prediction GlimmerHMM_glimmerT_61596-T1 fails validation.
(TCA)	 AG	1850-2067	GT	AGG
(AAG)	 AG	4476-4538	TC	GAT
-recovered GlimmerHMM_glimmerT_61596-T1, terminal, 4476, 4538
-recovered GlimmerHMM_glimmerT_61596-T1, internal, 1850, 2067
Valid prediction for GeneMark_model.107110_t
Couldn't classify 37, 57
Sorry, prediction GeneMark_model.107115_t fails validation.
(AGC)	 AG	37-57	GT	ATG
(AGG)	 AG	241-318	GT	GAG
(AGG)	 AG	669-870	AA	AAA
-recovered GeneMark_model.107115_t, terminal, 669, 870
-recovered GeneMark_model.107115_t, internal, 37, 57
-recovered GeneMark_model.107115_t, internal, 241, 318
Couldn't classify 207, 318
Sorry, prediction snap_scaffold_260-snap.2-T1 fails validation.
(GAC)	 AG	207-318	GT	GAG
(AAA)	 AG	921-981	GT	AAG
(GGT)	 AG	1891-2067	GT	AGG
(AGT)	 AG	2904-3159	GT	TGG
(CTT)	 AG	3661-3836	AC	AGA
-recovered snap_scaffold_260-snap.2-T1, terminal, 3661, 3836
-recovered snap_scaffold_260-snap.2-T1, internal, 207, 318
-recovered snap_scaffold_260-snap.2-T1, internal, 921, 981
-recovered snap_scaffold_260-snap.2-T1, internal, 1891, 2067
-recovered snap_scaffold_260-snap.2-T1, internal, 2904, 3159

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7023, rend_intergenic: 5045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8880
-exon list size: 47


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7023, rend_intergenic: 5045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support