-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_7573132-7687317

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.100185_t
Valid prediction for GeneMark_model.100180_t
Valid prediction for Augustus_model.g38281.t1
Valid prediction for GeneMark_model.100203_t
Valid prediction for GlimmerHMM_glimmerT_57457-T1
Valid prediction for GeneMark_model.100196_t
Valid prediction for snap_scaffold_26-snap.1809-T1
Valid prediction for CodingQuarry_transcript_40310-T1
Valid prediction for GeneMark_model.100199_t
Valid prediction for GlimmerHMM_glimmerT_57446-T1
Valid prediction for snap_scaffold_26-snap.1782-T1
Valid prediction for snap_scaffold_26-snap.1798-T1
Valid prediction for snap_scaffold_26-snap.1804-T1
Valid prediction for snap_scaffold_26-snap.1789-T1
Valid prediction for GlimmerHMM_glimmerT_57442-T1
Valid prediction for snap_scaffold_26-snap.1793-T1
Valid prediction for Augustus_model.g38291.t1
Valid prediction for GlimmerHMM_glimmerT_57462-T1
Couldn't classify 12385, 12519
Couldn't classify 13418, 13465
Sorry, prediction pasa_asmbl_35656.p1 fails validation.
(GCT)	 AA	12385-12519	GT	TGG
(GGT)	 AG	12750-12827	GT	AGG
(CGC)	 AG	12941-13092	GT	AGG
(AAG)	 AG	13247-13301	GT	GGG
(GTG)	 AG	13418-13465	CG	GAC
-recovered pasa_asmbl_35656.p1, internal, 12750, 12827
-recovered pasa_asmbl_35656.p1, internal, 12941, 13092
-recovered pasa_asmbl_35656.p1, internal, 13247, 13301
Valid prediction for GeneMark_model.100205_t
Valid prediction for snap_scaffold_26-snap.1801-T1
Valid prediction for Augustus_model.g38280.t1
Valid prediction for Augustus_model.g38292.t1
Valid prediction for GlimmerHMM_glimmerT_57453-T1
Valid prediction for GeneMark_model.100191_t
Valid prediction for Augustus_model.g38282.t1
Valid prediction for snap_scaffold_26-snap.1796-T1
Valid prediction for GeneMark_model.100198_t
Valid prediction for GeneMark_model.100194_t
Valid prediction for snap_scaffold_26-snap.1785-T1
Valid prediction for GeneMark_model.100179_t
Valid prediction for GeneMark_model.100182_t
Valid prediction for snap_scaffold_26-snap.1808-T1
Valid prediction for GeneMark_model.100183_t
Valid prediction for GeneMark_model.100207_t
Valid prediction for GeneMark_model.100189_t
Couldn't classify 14253, 14451
Sorry, prediction pasa_asmbl_35658.p1 fails validation.
(CCT)	 CT	14253-14451	GT	AGG
(AGC)	 AG	14583-14924	GT	AGG
(ATT)	 AG	15012-15119	GT	AGG
(AAG)	 AG	15235-15359	GT	AGG
(GTT)	 AG	15522-15573	GT	TGG
(AGG)	 AG	15664-15800	AC	AGA
-recovered pasa_asmbl_35658.p1, terminal, 15664, 15800
-recovered pasa_asmbl_35658.p1, internal, 14583, 14924
-recovered pasa_asmbl_35658.p1, internal, 15012, 15119
-recovered pasa_asmbl_35658.p1, internal, 15235, 15359
-recovered pasa_asmbl_35658.p1, internal, 15522, 15573
Valid prediction for snap_scaffold_26-snap.1792-T1
Valid prediction for GlimmerHMM_glimmerT_57461-T1
Valid prediction for Augustus_model.g38290.t1
Valid prediction for snap_scaffold_26-snap.1795-T1
Valid prediction for Augustus_model.g38284.t1
Valid prediction for GeneMark_model.100187_t
Valid prediction for GlimmerHMM_glimmerT_57463-T1
Valid prediction for snap_scaffold_26-snap.1803-T1
Valid prediction for snap_scaffold_26-snap.1800-T1
Valid prediction for GeneMark_model.100204_t
Valid prediction for Augustus_model.g38289.t1
Valid prediction for Augustus_model.g38288.t1
Valid prediction for GlimmerHMM_glimmerT_57456-T1
Valid prediction for snap_scaffold_26-snap.1797-T1
Valid prediction for snap_scaffold_26-snap.1790-T1
Valid prediction for Augustus_model.g38293.t1
Valid prediction for GlimmerHMM_glimmerT_57444-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_57451-T1
Valid prediction for Augustus_model.g38286.t1
Valid prediction for GlimmerHMM_glimmerT_57447-T1
Valid prediction for GeneMark_model.100195_t
Valid prediction for Augustus_model.g38283.t1
Valid prediction for snap_scaffold_26-snap.1784-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.100201_t
Valid prediction for GlimmerHMM_glimmerT_57449-T1
Valid prediction for GlimmerHMM_glimmerT_57450-T1
Valid prediction for snap_scaffold_26-snap.1806-T1
Valid prediction for GeneMark_model.100192_t
Valid prediction for GeneMark_model.100197_t
Valid prediction for snap_scaffold_26-snap.1788-T1
Valid prediction for GeneMark_model.100184_t
Valid prediction for GeneMark_model.100193_t
Valid prediction for snap_scaffold_26-snap.1794-T1
Valid prediction for snap_scaffold_26-snap.1799-T1
Valid prediction for GlimmerHMM_glimmerT_57455-T1
Valid prediction for GlimmerHMM_glimmerT_57458-T1
Valid prediction for GeneMark_model.100202_t
Valid prediction for GlimmerHMM_glimmerT_57454-T1
Valid prediction for GeneMark_model.100190_t
Valid prediction for GlimmerHMM_glimmerT_57445-T1
Valid prediction for GeneMark_model.100200_t
Valid prediction for snap_scaffold_26-snap.1802-T1
Valid prediction for snap_scaffold_26-snap.1783-T1
Valid prediction for snap_scaffold_26-snap.1791-T1
Valid prediction for GeneMark_model.100208_t
Couldn't classify 97381, 97689
Sorry, prediction pasa_asmbl_34990.p1 fails validation.
(GCT)	 GT	97381-97689	TC	TCT
Valid prediction for GlimmerHMM_glimmerT_57460-T1
Valid prediction for snap_scaffold_26-snap.1807-T1
Valid prediction for Augustus_model.g38285.t1
Valid prediction for snap_scaffold_26-snap.1805-T1
Valid prediction for GeneMark_model.100206_t
Valid prediction for snap_scaffold_26-snap.1787-T1
Valid prediction for GlimmerHMM_glimmerT_57459-T1
Valid prediction for GlimmerHMM_glimmerT_57443-T1
Valid prediction for GeneMark_model.100188_t
Valid prediction for GlimmerHMM_glimmerT_57448-T1
Valid prediction for GlimmerHMM_glimmerT_57464-T1
Valid prediction for snap_scaffold_26-snap.1786-T1
Valid prediction for GeneMark_model.100181_t
Valid prediction for GlimmerHMM_glimmerT_57452-T1
Valid prediction for Augustus_model.g38287.t1
Valid prediction for GeneMark_model.100186_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 106416, rend_intergenic: 106413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16493, rend_intergenic: 6602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25919, rend_intergenic: 17653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56745, rend_intergenic: 53992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70926, rend_intergenic: 68830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 114186
-exon list size: 456


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.5    
1.7    
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2.6    
2.8    
3.1    
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3.7    
3.9    
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5.9    
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6.8    
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8.7    
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10.0    
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10.7    
10.9    
11.1    
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11.8    
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12.2    
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12.9    
13.1    
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13.5    
13.8    
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14.2    
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14.6    
14.8    
15.1    
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17.0    
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17.7    
17.9    
18.1    
18.3    
18.6    
18.8    
19.0    
19.2    
19.4    
19.7    
19.9    
20.1    
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20.5    
20.7    
21.0    
21.2    
21.4    
21.6    
21.8    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.8    
26.0    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.2    
28.4    
28.6    
28.8    
29.0    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.6    
30.8    
31.0    
31.2    
31.4    
31.7    
31.9    
32.1    
32.3    
32.5    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.1    
34.3    
34.5    
34.7    
34.9    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.1    
37.3    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.9    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
41.9    
42.1    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.7    
43.9    
44.1    
44.3    
44.5    
44.8    
45.0    
45.2    
45.4    
45.6    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.2    
47.4    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.6    
52.8    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.4    
54.6    
54.8    
55.0    
55.2    
55.5    
55.7    
55.9    
56.1    
56.3    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.9    
58.1    
58.3    
58.5    
58.7    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
60.9    
61.1    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.7    
62.9    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.1    
65.3    
65.5    
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65.9    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.5    
67.7    
67.9    
68.1    
68.3    
68.6    
68.8    
69.0    
69.2    
69.4    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
71.0    
71.2    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.0    
74.2    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.8    
79.0    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.6    
80.8    
81.0    
81.2    
81.4    
81.7    
81.9    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.1    
84.3    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.5    
86.7    
86.9    
87.1    
87.3    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.9    
89.1    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.3    
91.5    
91.7    
91.9    
92.1    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.7    
93.9    
94.1    
94.3    
94.5    
94.8    
95.0    
95.2    
95.4    
95.6    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.8    
98.0    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 24 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 106416, rend_intergenic: 106413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16493, rend_intergenic: 6602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25919, rend_intergenic: 17653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56745, rend_intergenic: 53992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70926, rend_intergenic: 68830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support