-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_6894414-6931406

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g38191.t1
Valid prediction for snap_scaffold_26-snap.1600-T1
Valid prediction for GeneMark_model.99936_t
Valid prediction for Augustus_model.g38193.t1
Valid prediction for GlimmerHMM_glimmerT_57306-T1
Valid prediction for GeneMark_model.99943_t
Valid prediction for GlimmerHMM_glimmerT_57303-T1
Valid prediction for snap_scaffold_26-snap.1609-T1
Valid prediction for Augustus_model.g38194.t1
Valid prediction for GeneMark_model.99941_t
Valid prediction for snap_scaffold_26-snap.1610-T1
Valid prediction for snap_scaffold_26-snap.1605-T1
Valid prediction for GeneMark_model.99944_t
Valid prediction for GeneMark_model.99938_t
Valid prediction for GlimmerHMM_glimmerT_57310-T1
Valid prediction for snap_scaffold_26-snap.1611-T1
Valid prediction for snap_scaffold_26-snap.1608-T1
Valid prediction for GlimmerHMM_glimmerT_57309-T1
Valid prediction for snap_scaffold_26-snap.1601-T1
Valid prediction for Augustus_model.g38192.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.99940_t
Valid prediction for GlimmerHMM_glimmerT_57304-T1
Valid prediction for snap_scaffold_26-snap.1603-T1
Valid prediction for GeneMark_model.99934_t
Valid prediction for GlimmerHMM_glimmerT_57301-T1
Valid prediction for GlimmerHMM_glimmerT_57302-T1
Valid prediction for snap_scaffold_26-snap.1602-T1
Valid prediction for snap_scaffold_26-snap.1607-T1
Valid prediction for Augustus_model.g38189.t1
Valid prediction for GeneMark_model.99935_t
Valid prediction for GlimmerHMM_glimmerT_57307-T1
Valid prediction for GlimmerHMM_glimmerT_57305-T1
Valid prediction for snap_scaffold_26-snap.1606-T1
Valid prediction for GlimmerHMM_glimmerT_57308-T1
Valid prediction for GeneMark_model.99937_t
Valid prediction for snap_scaffold_26-snap.1612-T1
Valid prediction for snap_scaffold_26-snap.1604-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g38190.t1
Valid prediction for GeneMark_model.99939_t
Valid prediction for GeneMark_model.99942_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17036, rend_intergenic: 13227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 36993
-exon list size: 159


building trellis

0.6    
1.2    
1.9    
2.5    
3.1    
3.7    
4.3    
5.0    
5.6    
6.2    
6.8    
7.5    
8.1    
8.7    
9.3    
9.9    
10.6    
11.2    
11.8    
12.4    
13.0    
13.7    
14.3    
14.9    
15.5    
16.1    
16.8    
17.4    
18.0    
18.6    
19.3    
19.9    
20.5    
21.1    
21.7    
22.4    
23.0    
23.6    
24.2    
24.8    
25.5    
26.1    
26.7    
27.3    
28.0    
28.6    
29.2    
29.8    
30.4    
31.1    
31.7    
32.3    
32.9    
33.5    
34.2    
34.8    
35.4    
36.0    
36.6    
37.3    
37.9    
38.5    
39.1    
39.8    
40.4    
41.0    
41.6    
42.2    
42.9    
43.5    
44.1    
44.7    
45.3    
46.0    
46.6    
47.2    
47.8    
48.4    
49.1    
49.7    
50.3    
50.9    
51.6    
52.2    
52.8    
53.4    
54.0    
54.7    
55.3    
55.9    
56.5    
57.1    
57.8    
58.4    
59.0    
59.6    
60.2    
60.9    
61.5    
62.1    
62.7    
63.4    
64.0    
64.6    
65.2    
65.8    
66.5    
67.1    
67.7    
68.3    
68.9    
69.6    
70.2    
70.8    
71.4    
72.0    
72.7    
73.3    
73.9    
74.5    
75.2    
75.8    
76.4    
77.0    
77.6    
78.3    
78.9    
79.5    
80.1    
80.7    
81.4    
82.0    
82.6    
83.2    
83.9    
84.5    
85.1    
85.7    
86.3    
87.0    
87.6    
88.2    
88.8    
89.4    
90.1    
90.7    
91.3    
91.9    
92.5    
93.2    
93.8    
94.4    
95.0    
95.7    
96.3    
96.9    
97.5    
98.1    
98.8    
99.4    
-found 10 predictions from path traversal
Error with prediction: snap lend_intergenic: 17036, rend_intergenic: 13227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support