-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_6784345-6897160

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.99929_t
Valid prediction for snap_scaffold_26-snap.1591-T1
Valid prediction for snap_scaffold_26-snap.1585-T1
Valid prediction for GeneMark_model.99907_t
Valid prediction for GlimmerHMM_glimmerT_57296-T1
Valid prediction for Augustus_model.g38177.t1
Valid prediction for snap_scaffold_26-snap.1594-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.99901_t
Valid prediction for GeneMark_model.99903_t
Valid prediction for GlimmerHMM_glimmerT_57292-T1
Valid prediction for snap_scaffold_26-snap.1579-T1
Valid prediction for Augustus_model.g38188.t1
Valid prediction for Augustus_model.g38187.t1
Valid prediction for GeneMark_model.99931_t
Valid prediction for snap_scaffold_26-snap.1570-T1
Valid prediction for GeneMark_model.99906_t
Valid prediction for snap_scaffold_26-snap.1581-T1
Valid prediction for GeneMark_model.99917_t
Valid prediction for GlimmerHMM_glimmerT_57287-T1
Valid prediction for GeneMark_model.99909_t
Valid prediction for snap_scaffold_26-snap.1599-T1
Valid prediction for snap_scaffold_26-snap.1577-T1
Valid prediction for Augustus_model.g38180.t1
Valid prediction for GeneMark_model.99932_t
Valid prediction for snap_scaffold_26-snap.1582-T1
Valid prediction for snap_scaffold_26-snap.1597-T1
Valid prediction for snap_scaffold_26-snap.1584-T1
Valid prediction for GlimmerHMM_glimmerT_57289-T1
Valid prediction for GeneMark_model.99904_t
Valid prediction for GeneMark_model.99912_t
Valid prediction for snap_scaffold_26-snap.1576-T1
Valid prediction for GeneMark_model.99923_t
Valid prediction for GlimmerHMM_glimmerT_57288-T1
Valid prediction for snap_scaffold_26-snap.1586-T1
Valid prediction for GlimmerHMM_glimmerT_57298-T1
Valid prediction for GeneMark_model.99915_t
Valid prediction for GlimmerHMM_glimmerT_57286-T1
Valid prediction for GlimmerHMM_glimmerT_57285-T1
Valid prediction for snap_scaffold_26-snap.1587-T1
Valid prediction for Augustus_model.g38182.t1
Valid prediction for GeneMark_model.99925_t
Valid prediction for GlimmerHMM_glimmerT_57290-T1
Valid prediction for snap_scaffold_26-snap.1588-T1
Valid prediction for GlimmerHMM_glimmerT_57284-T1
Valid prediction for snap_scaffold_26-snap.1574-T1
Valid prediction for GeneMark_model.99918_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.99926_t
Valid prediction for GlimmerHMM_glimmerT_57283-T1
Valid prediction for snap_scaffold_26-snap.1583-T1
Valid prediction for GlimmerHMM_glimmerT_57282-T1
Valid prediction for snap_scaffold_26-snap.1575-T1
Valid prediction for GeneMark_model.99908_t
Valid prediction for snap_scaffold_26-snap.1580-T1
Valid prediction for GlimmerHMM_glimmerT_57295-T1
Valid prediction for snap_scaffold_26-snap.1571-T1
Valid prediction for Augustus_model.g38185.t1
Valid prediction for snap_scaffold_26-snap.1593-T1
Valid prediction for Augustus_model.g38183.t1
Valid prediction for GeneMark_model.99922_t
Valid prediction for Augustus_model.g38184.t1
Valid prediction for GlimmerHMM_glimmerT_57293-T1
Valid prediction for GeneMark_model.99910_t
Valid prediction for snap_scaffold_26-snap.1589-T1
Valid prediction for GlimmerHMM_glimmerT_57281-T1
Valid prediction for GeneMark_model.99916_t
Valid prediction for GeneMark_model.99928_t
Valid prediction for GeneMark_model.99902_t
Valid prediction for Augustus_model.g38186.t1
Valid prediction for snap_scaffold_26-snap.1590-T1
Valid prediction for Augustus_model.g38181.t1
Valid prediction for GeneMark_model.99933_t
Valid prediction for GeneMark_model.99914_t
Valid prediction for GeneMark_model.99921_t
Valid prediction for GeneMark_model.99900_t
Valid prediction for GlimmerHMM_glimmerT_57297-T1
Valid prediction for GlimmerHMM_glimmerT_57300-T1
Valid prediction for snap_scaffold_26-snap.1592-T1
Valid prediction for GeneMark_model.99924_t
Valid prediction for snap_scaffold_26-snap.1595-T1
Valid prediction for snap_scaffold_26-snap.1573-T1
Valid prediction for Augustus_model.g38178.t1
Valid prediction for GeneMark_model.99927_t
Valid prediction for snap_scaffold_26-snap.1572-T1
Valid prediction for GlimmerHMM_glimmerT_57294-T1
Valid prediction for GlimmerHMM_glimmerT_57299-T1
Valid prediction for Augustus_model.g38179.t1
Valid prediction for GlimmerHMM_glimmerT_57291-T1
Valid prediction for snap_scaffold_26-snap.1578-T1
Valid prediction for snap_scaffold_26-snap.1596-T1
Valid prediction for GeneMark_model.99913_t
Valid prediction for GeneMark_model.99920_t
Valid prediction for snap_scaffold_26-snap.1598-T1
Valid prediction for GeneMark_model.99911_t
Valid prediction for GeneMark_model.99905_t
Valid prediction for GeneMark_model.99919_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8015, rend_intergenic: 3310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20436, rend_intergenic: 19265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27828, rend_intergenic: 20774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34186, rend_intergenic: 32689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38993, rend_intergenic: 37806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49628, rend_intergenic: 45490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83173, rend_intergenic: 79841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108145, rend_intergenic: 107892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112501, rend_intergenic: 108335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 112816
-exon list size: 416


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.2    
2.4    
2.6    
2.9    
3.1    
3.3    
3.6    
3.8    
4.1    
4.3    
4.5    
4.8    
5.0    
5.3    
5.5    
5.7    
6.0    
6.2    
6.5    
6.7    
6.9    
7.2    
7.4    
7.7    
7.9    
8.1    
8.4    
8.6    
8.9    
9.1    
9.3    
9.6    
9.8    
10.0    
10.3    
10.5    
10.8    
11.0    
11.2    
11.5    
11.7    
12.0    
12.2    
12.4    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.8    
15.1    
15.3    
15.6    
15.8    
16.0    
16.3    
16.5    
16.7    
17.0    
17.2    
17.5    
17.7    
17.9    
18.2    
18.4    
18.7    
18.9    
19.1    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.1    
21.3    
21.5    
21.8    
22.0    
22.2    
22.5    
22.7    
23.0    
23.2    
23.4    
23.7    
23.9    
24.2    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.0    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.2    
29.4    
29.7    
29.9    
30.1    
30.4    
30.6    
30.9    
31.1    
31.3    
31.6    
31.8    
32.1    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.4    
34.7    
34.9    
35.2    
35.4    
35.6    
35.9    
36.1    
36.4    
36.6    
36.8    
37.1    
37.3    
37.6    
37.8    
38.0    
38.3    
38.5    
38.8    
39.0    
39.2    
39.5    
39.7    
40.0    
40.2    
40.4    
40.7    
40.9    
41.1    
41.4    
41.6    
41.9    
42.1    
42.3    
42.6    
42.8    
43.1    
43.3    
43.5    
43.8    
44.0    
44.3    
44.5    
44.7    
45.0    
45.2    
45.5    
45.7    
45.9    
46.2    
46.4    
46.7    
46.9    
47.1    
47.4    
47.6    
47.8    
48.1    
48.3    
48.6    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.4    
51.7    
51.9    
52.2    
52.4    
52.6    
52.9    
53.1    
53.3    
53.6    
53.8    
54.1    
54.3    
54.5    
54.8    
55.0    
55.3    
55.5    
55.7    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.7    
57.9    
58.1    
58.4    
58.6    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.3    
60.5    
60.8    
61.0    
61.2    
61.5    
61.7    
62.0    
62.2    
62.4    
62.7    
62.9    
63.2    
63.4    
63.6    
63.9    
64.1    
64.4    
64.6    
64.8    
65.1    
65.3    
65.6    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
67.9    
68.2    
68.4    
68.7    
68.9    
69.1    
69.4    
69.6    
69.9    
70.1    
70.3    
70.6    
70.8    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.5    
72.7    
73.0    
73.2    
73.4    
73.7    
73.9    
74.2    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.8    
76.1    
76.3    
76.6    
76.8    
77.0    
77.3    
77.5    
77.8    
78.0    
78.2    
78.5    
78.7    
78.9    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.9    
81.1    
81.3    
81.6    
81.8    
82.1    
82.3    
82.5    
82.8    
83.0    
83.3    
83.5    
83.7    
84.0    
84.2    
84.4    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.2    
89.5    
89.7    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.4    
91.6    
91.9    
92.1    
92.3    
92.6    
92.8    
93.1    
93.3    
93.5    
93.8    
94.0    
94.3    
94.5    
94.7    
95.0    
95.2    
95.5    
95.7    
95.9    
96.2    
96.4    
96.7    
96.9    
97.1    
97.4    
97.6    
97.8    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 8015, rend_intergenic: 3310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20436, rend_intergenic: 19265  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27828, rend_intergenic: 20774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34186, rend_intergenic: 32689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38993, rend_intergenic: 37806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49628, rend_intergenic: 45490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83173, rend_intergenic: 79841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108145, rend_intergenic: 107892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112501, rend_intergenic: 108335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support