-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_6139877-6240744

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1412-T1
Valid prediction for GlimmerHMM_glimmerT_57160-T1
Valid prediction for GeneMark_model.99733_t
Valid prediction for Augustus_model.g38099.t1
Valid prediction for GeneMark_model.99731_t
Valid prediction for GeneMark_model.99720_t
Valid prediction for GlimmerHMM_glimmerT_57161-T1
Valid prediction for snap_scaffold_26-snap.1413-T1
Valid prediction for GlimmerHMM_glimmerT_57169-T1
Valid prediction for Augustus_model.g38102.t1
Valid prediction for snap_scaffold_26-snap.1416-T1
Valid prediction for snap_scaffold_26-snap.1430-T1
Valid prediction for GeneMark_model.99724_t
Valid prediction for snap_scaffold_26-snap.1411-T1
Valid prediction for GlimmerHMM_glimmerT_57165-T1
Valid prediction for GeneMark_model.99735_t
Valid prediction for GlimmerHMM_glimmerT_57168-T1
Valid prediction for GeneMark_model.99726_t
Valid prediction for snap_scaffold_26-snap.1424-T1
Valid prediction for snap_scaffold_26-snap.1407-T1
Valid prediction for GeneMark_model.99741_t
Valid prediction for Augustus_model.g38101.t1
Valid prediction for snap_scaffold_26-snap.1428-T1
Valid prediction for snap_scaffold_26-snap.1423-T1
Valid prediction for GlimmerHMM_glimmerT_57159-T1
Valid prediction for GlimmerHMM_glimmerT_57178-T1
Valid prediction for snap_scaffold_26-snap.1418-T1
Valid prediction for snap_scaffold_26-snap.1422-T1
Valid prediction for GeneMark_model.99737_t
Valid prediction for GlimmerHMM_glimmerT_57173-T1
Valid prediction for GlimmerHMM_glimmerT_57166-T1
Valid prediction for snap_scaffold_26-snap.1426-T1
Valid prediction for Augustus_model.g38095.t1
Valid prediction for GeneMark_model.99745_t
Valid prediction for GeneMark_model.99729_t
Valid prediction for GlimmerHMM_glimmerT_57174-T1
Valid prediction for snap_scaffold_26-snap.1405-T1
Valid prediction for snap_scaffold_26-snap.1419-T1
Valid prediction for GeneMark_model.99740_t
Valid prediction for GlimmerHMM_glimmerT_57167-T1
Valid prediction for GeneMark_model.99728_t
Valid prediction for GlimmerHMM_glimmerT_57164-T1
Valid prediction for GeneMark_model.99721_t
Valid prediction for GeneMark_model.99738_t
Valid prediction for GeneMark_model.99743_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_57170-T1
Valid prediction for GeneMark_model.99725_t
Valid prediction for GeneMark_model.99719_t
Valid prediction for GlimmerHMM_glimmerT_57171-T1
Valid prediction for snap_scaffold_26-snap.1421-T1
Valid prediction for GeneMark_model.99739_t
Valid prediction for snap_scaffold_26-snap.1409-T1
Valid prediction for GlimmerHMM_glimmerT_57176-T1
Valid prediction for GeneMark_model.99734_t
Valid prediction for snap_scaffold_26-snap.1420-T1
Valid prediction for GeneMark_model.99747_t
Valid prediction for Augustus_model.g38093.t1
Valid prediction for snap_scaffold_26-snap.1410-T1
Valid prediction for Augustus_model.g38097.t1
Valid prediction for GeneMark_model.99727_t
Valid prediction for snap_scaffold_26-snap.1414-T1
Valid prediction for GlimmerHMM_glimmerT_57163-T1
Valid prediction for GeneMark_model.99722_t
Valid prediction for GeneMark_model.99736_t
Valid prediction for GeneMark_model.99746_t
Valid prediction for GlimmerHMM_glimmerT_57177-T1
Valid prediction for GeneMark_model.99732_t
Valid prediction for GlimmerHMM_glimmerT_57172-T1
Valid prediction for snap_scaffold_26-snap.1429-T1
Valid prediction for snap_scaffold_26-snap.1432-T1
Valid prediction for snap_scaffold_26-snap.1417-T1
Valid prediction for Augustus_model.g38096.t1
Valid prediction for snap_scaffold_26-snap.1404-T1
Valid prediction for GeneMark_model.99730_t
Valid prediction for GlimmerHMM_glimmerT_57162-T1
Valid prediction for GeneMark_model.99744_t
Valid prediction for Augustus_model.g38092.t1
Valid prediction for Augustus_model.g38100.t1
Valid prediction for GlimmerHMM_glimmerT_57175-T1
Valid prediction for snap_scaffold_26-snap.1427-T1
Valid prediction for Augustus_model.g38094.t1
Valid prediction for snap_scaffold_26-snap.1408-T1
Valid prediction for snap_scaffold_26-snap.1431-T1
Valid prediction for Augustus_model.g38103.t1
Valid prediction for GeneMark_model.99718_t
Valid prediction for GeneMark_model.99742_t
Valid prediction for snap_scaffold_26-snap.1415-T1
Valid prediction for GeneMark_model.99723_t
Valid prediction for snap_scaffold_26-snap.1403-T1
Valid prediction for snap_scaffold_26-snap.1425-T1
Valid prediction for snap_scaffold_26-snap.1406-T1
Valid prediction for Augustus_model.g38098.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9534, rend_intergenic: 7274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32826, rend_intergenic: 24600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42427, rend_intergenic: 38801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81009, rend_intergenic: 78694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86557, rend_intergenic: 81782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90420, rend_intergenic: 87224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95455, rend_intergenic: 91409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 100868
-exon list size: 452


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
1.3    
1.5    
1.8    
2.0    
2.2    
2.4    
2.6    
2.9    
3.1    
3.3    
3.5    
3.7    
4.0    
4.2    
4.4    
4.6    
4.8    
5.1    
5.3    
5.5    
5.7    
5.9    
6.2    
6.4    
6.6    
6.8    
7.0    
7.3    
7.5    
7.7    
7.9    
8.1    
8.4    
8.6    
8.8    
9.0    
9.3    
9.5    
9.7    
9.9    
10.1    
10.4    
10.6    
10.8    
11.0    
11.2    
11.5    
11.7    
11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.2    
13.4    
13.7    
13.9    
14.1    
14.3    
14.5    
14.8    
15.0    
15.2    
15.4    
15.6    
15.9    
16.1    
16.3    
16.5    
16.7    
17.0    
17.2    
17.4    
17.6    
17.8    
18.1    
18.3    
18.5    
18.7    
18.9    
19.2    
19.4    
19.6    
19.8    
20.0    
20.3    
20.5    
20.7    
20.9    
21.1    
21.4    
21.6    
21.8    
22.0    
22.2    
22.5    
22.7    
22.9    
23.1    
23.3    
23.6    
23.8    
24.0    
24.2    
24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.2    
26.4    
26.7    
26.9    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.4    
28.6    
28.9    
29.1    
29.3    
29.5    
29.7    
30.0    
30.2    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.7    
31.9    
32.2    
32.4    
32.6    
32.8    
33.0    
33.3    
33.5    
33.7    
33.9    
34.1    
34.4    
34.6    
34.8    
35.0    
35.2    
35.5    
35.7    
35.9    
36.1    
36.3    
36.6    
36.8    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.3    
38.5    
38.8    
39.0    
39.2    
39.4    
39.6    
39.9    
40.1    
40.3    
40.5    
40.7    
41.0    
41.2    
41.4    
41.6    
41.9    
42.1    
42.3    
42.5    
42.7    
43.0    
43.2    
43.4    
43.6    
43.8    
44.1    
44.3    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
46.9    
47.1    
47.4    
47.6    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
52.4    
52.6    
52.9    
53.1    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.7    
55.9    
56.2    
56.4    
56.6    
56.8    
57.0    
57.3    
57.5    
57.7    
57.9    
58.1    
58.4    
58.6    
58.8    
59.0    
59.3    
59.5    
59.7    
59.9    
60.1    
60.4    
60.6    
60.8    
61.0    
61.2    
61.5    
61.7    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.3    
64.5    
64.8    
65.0    
65.2    
65.4    
65.6    
65.9    
66.1    
66.3    
66.5    
66.7    
67.0    
67.2    
67.4    
67.6    
67.8    
68.1    
68.3    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.8    
70.0    
70.3    
70.5    
70.7    
70.9    
71.1    
71.4    
71.6    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.1    
73.3    
73.6    
73.8    
74.0    
74.2    
74.4    
74.7    
74.9    
75.1    
75.3    
75.6    
75.8    
76.0    
76.2    
76.4    
76.7    
76.9    
77.1    
77.3    
77.5    
77.8    
78.0    
78.2    
78.4    
78.6    
78.9    
79.1    
79.3    
79.5    
79.7    
80.0    
80.2    
80.4    
80.6    
80.8    
81.1    
81.3    
81.5    
81.7    
81.9    
82.2    
82.4    
82.6    
82.8    
83.0    
83.3    
83.5    
83.7    
83.9    
84.1    
84.4    
84.6    
84.8    
85.0    
85.2    
85.5    
85.7    
85.9    
86.1    
86.3    
86.6    
86.8    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.3    
88.5    
88.8    
89.0    
89.2    
89.4    
89.6    
89.9    
90.1    
90.3    
90.5    
90.7    
91.0    
91.2    
91.4    
91.6    
91.9    
92.1    
92.3    
92.5    
92.7    
93.0    
93.2    
93.4    
93.6    
93.8    
94.1    
94.3    
94.5    
94.7    
94.9    
95.2    
95.4    
95.6    
95.8    
96.0    
96.3    
96.5    
96.7    
96.9    
97.1    
97.4    
97.6    
97.8    
98.0    
98.2    
98.5    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 9534, rend_intergenic: 7274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32826, rend_intergenic: 24600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42427, rend_intergenic: 38801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81009, rend_intergenic: 78694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86557, rend_intergenic: 81782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90420, rend_intergenic: 87224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95455, rend_intergenic: 91409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support