-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_4844703-5067656

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_56920-T1
Valid prediction for GeneMark_model.99399_t
Valid prediction for GlimmerHMM_glimmerT_56914-T1
Valid prediction for GlimmerHMM_glimmerT_56929-T1
Valid prediction for snap_scaffold_26-snap.1080-T1
Valid prediction for Augustus_model.g37916.t1
Valid prediction for GeneMark_model.99397_t
Valid prediction for snap_scaffold_26-snap.1106-T1
Valid prediction for snap_scaffold_26-snap.1102-T1
Couldn't classify 212314, 212444
Couldn't classify 213453, 213582
Sorry, prediction pasa_asmbl_35485.p1 fails validation.
(CAG)	 TC	212314-212444	GT	GGG
(AGC)	 AG	212832-213018	GT	AGG
(ACG)	 AG	213182-213351	GT	AGG
(GTT)	 AG	213453-213582	GC	CGG
-recovered pasa_asmbl_35485.p1, internal, 212832, 213018
-recovered pasa_asmbl_35485.p1, internal, 213182, 213351
-recovered pasa_asmbl_35485.p1, internal, 213453, 213582
Valid prediction for GlimmerHMM_glimmerT_56937-T1
Valid prediction for GlimmerHMM_glimmerT_56933-T1
Valid prediction for snap_scaffold_26-snap.1121-T1
Valid prediction for snap_scaffold_26-snap.1117-T1
Valid prediction for Augustus_model.g37905.t1
Valid prediction for CodingQuarry_transcript_40244-T1
Valid prediction for snap_scaffold_26-snap.1081-T1
Valid prediction for snap_scaffold_26-snap.1099-T1
Valid prediction for GeneMark_model.99393_t
Valid prediction for GeneMark_model.99384_t
Valid prediction for GeneMark_model.99410_t
Valid prediction for Augustus_model.g37907.t1
Valid prediction for CodingQuarry_transcript_40242-T1
Valid prediction for GeneMark_model.99411_t
Valid prediction for Augustus_model.g37926.t1
Valid prediction for snap_scaffold_26-snap.1104-T1
Valid prediction for GeneMark_model.99417_t
Valid prediction for snap_scaffold_26-snap.1070-T1
Valid prediction for GlimmerHMM_glimmerT_56934-T1
Valid prediction for GeneMark_model.99390_t
Valid prediction for snap_scaffold_26-snap.1098-T1
Valid prediction for snap_scaffold_26-snap.1123-T1
Valid prediction for GeneMark_model.99395_t
Valid prediction for snap_scaffold_26-snap.1096-T1
Valid prediction for GlimmerHMM_glimmerT_56912-T1
Valid prediction for GeneMark_model.99381_t
Valid prediction for GlimmerHMM_glimmerT_56921-T1
Valid prediction for GlimmerHMM_glimmerT_56908-T1
Valid prediction for snap_scaffold_26-snap.1105-T1
Valid prediction for pasa_asmbl_35478.p1
Valid prediction for snap_scaffold_26-snap.1101-T1
Valid prediction for GeneMark_model.99412_t
Valid prediction for Augustus_model.g37906.t1
Valid prediction for HiQ_model.g37925.t1
Valid prediction for snap_scaffold_26-snap.1082-T1
Valid prediction for GlimmerHMM_glimmerT_56905-T1
Valid prediction for GeneMark_model.99427_t
Valid prediction for Augustus_model.g37917.t1
Valid prediction for Augustus_model.g37910.t1
Valid prediction for snap_scaffold_26-snap.1109-T1
Valid prediction for snap_scaffold_26-snap.1078-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.99406_t
Valid prediction for pasa_asmbl_35463.p1
Valid prediction for snap_scaffold_26-snap.1086-T1
Couldn't classify 216568, 216612
Couldn't classify 217129, 217252
Sorry, prediction pasa_asmbl_35486.p1 fails validation.
(AGC)	 GA	216568-216612	GT	AGG
(GAG)	 AG	216706-216995	GT	AGG
(GTT)	 AG	217129-217252	CA	CCC
-recovered pasa_asmbl_35486.p1, internal, 216706, 216995
Valid prediction for GlimmerHMM_glimmerT_56907-T1
Valid prediction for GeneMark_model.99421_t
Valid prediction for GeneMark_model.99414_t
Couldn't classify 184306, 184392
Sorry, prediction pasa_asmbl_35462.p1 fails validation.
(CGC)	 AG	184306-184392	GT	CGG
(CTG)	 AG	184818-184971	GT	GGG
(GCT)	 AG	185792-185858	GT	AAG
(CTG)	 AG	185997-186063	GT	TGG
(GTG)	 AG	186249-186340	GT	AAG
(GCT)	 AG	186465-186591	GT	AGG
(GGG)	 AG	186715-186756	GT	AGG
(GTC)	 AG	186842-186934	GT	TTG
(ATG)	 AG	187309-187404	AA	AGA
-recovered pasa_asmbl_35462.p1, terminal, 187309, 187404
-recovered pasa_asmbl_35462.p1, internal, 184306, 184392
-recovered pasa_asmbl_35462.p1, internal, 184818, 184971
-recovered pasa_asmbl_35462.p1, internal, 185792, 185858
-recovered pasa_asmbl_35462.p1, internal, 185997, 186063
-recovered pasa_asmbl_35462.p1, internal, 186249, 186340
-recovered pasa_asmbl_35462.p1, internal, 186465, 186591
-recovered pasa_asmbl_35462.p1, internal, 186715, 186756
-recovered pasa_asmbl_35462.p1, internal, 186842, 186934
Valid prediction for snap_scaffold_26-snap.1094-T1
Valid prediction for GlimmerHMM_glimmerT_56919-T1
Valid prediction for GlimmerHMM_glimmerT_56941-T1
Valid prediction for GeneMark_model.99408_t
Valid prediction for GlimmerHMM_glimmerT_56940-T1
Valid prediction for GlimmerHMM_glimmerT_56911-T1
Valid prediction for GlimmerHMM_glimmerT_56917-T1
Valid prediction for CodingQuarry_transcript_40243-T1
Valid prediction for Augustus_model.g37920.t1
Valid prediction for GlimmerHMM_glimmerT_56928-T1
Valid prediction for snap_scaffold_26-snap.1100-T1
Valid prediction for Augustus_model.g37909.t1
Valid prediction for GeneMark_model.99403_t
Valid prediction for snap_scaffold_26-snap.1110-T1
Valid prediction for GeneMark_model.99382_t
Valid prediction for GeneMark_model.99405_t
Valid prediction for GlimmerHMM_glimmerT_56926-T1
Couldn't classify 209602, 209682
Couldn't classify 210782, 210792
Sorry, prediction pasa_asmbl_35484.p1 fails validation.
(AAG)	 AG	209602-209682	GT	AGG
(GTC)	 AG	209841-209919	GT	GGG
(GAC)	 AG	210032-210078	GT	AGG
(GAA)	 AG	210197-210254	GT	ACG
(CGC)	 AG	210359-210448	GT	TGG
(CTG)	 AG	210560-210679	GT	AGG
(CGA)	 AG	210782-210792	CC	CCC
-recovered pasa_asmbl_35484.p1, internal, 209602, 209682
-recovered pasa_asmbl_35484.p1, internal, 209841, 209919
-recovered pasa_asmbl_35484.p1, internal, 210032, 210078
-recovered pasa_asmbl_35484.p1, internal, 210197, 210254
-recovered pasa_asmbl_35484.p1, internal, 210359, 210448
-recovered pasa_asmbl_35484.p1, internal, 210560, 210679
Valid prediction for snap_scaffold_26-snap.1075-T1
Valid prediction for snap_scaffold_26-snap.1114-T1
Valid prediction for GeneMark_model.99426_t
Valid prediction for Augustus_model.g37924.t1
Valid prediction for GlimmerHMM_glimmerT_56930-T1
Valid prediction for snap_scaffold_26-snap.1091-T1
Couldn't classify 218827, 218952
Couldn't classify 219963, 220035
Sorry, prediction pasa_asmbl_35836.p2 fails validation.
(GAG)	 CA	218827-218952	GT	AGG
(GAG)	 AG	219673-219869	GT	AGG
(ACT)	 AG	219963-220035	GC	CCG
-recovered pasa_asmbl_35836.p2, internal, 219673, 219869
-recovered pasa_asmbl_35836.p2, internal, 219963, 220035
Valid prediction for snap_scaffold_26-snap.1084-T1
Valid prediction for Augustus_model.g37923.t1
Valid prediction for snap_scaffold_26-snap.1077-T1
Valid prediction for GeneMark_model.99379_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.1095-T1
Valid prediction for snap_scaffold_26-snap.1073-T1
Valid prediction for snap_scaffold_26-snap.1093-T1
Valid prediction for snap_scaffold_26-snap.1085-T1
Valid prediction for snap_scaffold_26-snap.1118-T1
Valid prediction for GeneMark_model.99423_t
Valid prediction for GlimmerHMM_glimmerT_56932-T1
Valid prediction for Augustus_model.g37912.t1
Valid prediction for snap_scaffold_26-snap.1071-T1
Valid prediction for GlimmerHMM_glimmerT_56924-T1
Valid prediction for GeneMark_model.99401_t
Valid prediction for snap_scaffold_26-snap.1103-T1
Valid prediction for Augustus_model.g37913.t1
Valid prediction for GeneMark_model.99424_t
Valid prediction for GlimmerHMM_glimmerT_56916-T1
Valid prediction for Augustus_model.g37919.t1
Valid prediction for GlimmerHMM_glimmerT_56915-T1
Valid prediction for GlimmerHMM_glimmerT_56936-T1
Valid prediction for GeneMark_model.99396_t
Valid prediction for GeneMark_model.99389_t
Valid prediction for GeneMark_model.99385_t
Valid prediction for snap_scaffold_26-snap.1107-T1
Valid prediction for GeneMark_model.99400_t
Valid prediction for GlimmerHMM_glimmerT_56939-T1
Valid prediction for Augustus_model.g37918.t1
Valid prediction for snap_scaffold_26-snap.1111-T1
Valid prediction for GeneMark_model.99428_t
Valid prediction for GeneMark_model.99386_t
Valid prediction for Augustus_model.g37908.t1
Valid prediction for GeneMark_model.99409_t
Valid prediction for GlimmerHMM_glimmerT_56918-T1
Valid prediction for GeneMark_model.99425_t
Valid prediction for Augustus_model.g37922.t1
Valid prediction for GlimmerHMM_glimmerT_56913-T1
Valid prediction for snap_scaffold_26-snap.1113-T1
Valid prediction for GlimmerHMM_glimmerT_56923-T1
Couldn't classify 120588, 120744
Couldn't classify 122564, 122614
Sorry, prediction pasa_asmbl_35147.p1 fails validation.
(TTC)	 AG	120588-120744	GT	AGG
(GCA)	 AG	121362-121510	GT	AAG
(ATG)	 AG	122564-122614	AA	GCA
-recovered pasa_asmbl_35147.p1, internal, 120588, 120744
-recovered pasa_asmbl_35147.p1, internal, 121362, 121510
Valid prediction for snap_scaffold_26-snap.1090-T1
Valid prediction for Augustus_model.g37903.t1
Valid prediction for Augustus_model.g37921.t1
Valid prediction for GlimmerHMM_glimmerT_56906-T1
Valid prediction for GeneMark_model.99418_t
Valid prediction for GeneMark_model.99422_t
Valid prediction for GlimmerHMM_glimmerT_56938-T1
Valid prediction for snap_scaffold_26-snap.1119-T1
Valid prediction for Augustus_model.g37904.t1
Valid prediction for GlimmerHMM_glimmerT_56935-T1
Valid prediction for GlimmerHMM_glimmerT_56925-T1
Valid prediction for GeneMark_model.99419_t
Valid prediction for snap_scaffold_26-snap.1083-T1
Valid prediction for snap_scaffold_26-snap.1076-T1
Valid prediction for snap_scaffold_26-snap.1124-T1
Valid prediction for GeneMark_model.99402_t
Valid prediction for snap_scaffold_26-snap.1120-T1
Valid prediction for snap_scaffold_26-snap.1097-T1
Valid prediction for Augustus_model.g37914.t1
Valid prediction for GeneMark_model.99380_t
Valid prediction for GeneMark_model.99391_t
Valid prediction for GeneMark_model.99415_t
Valid prediction for GeneMark_model.99420_t
Valid prediction for snap_scaffold_26-snap.1122-T1
Valid prediction for snap_scaffold_26-snap.1072-T1
Valid prediction for snap_scaffold_26-snap.1112-T1
Valid prediction for GeneMark_model.99398_t
Valid prediction for snap_scaffold_26-snap.1092-T1
Valid prediction for GeneMark_model.99404_t
Valid prediction for GlimmerHMM_glimmerT_56927-T1
Valid prediction for GeneMark_model.99416_t
Valid prediction for GlimmerHMM_glimmerT_56922-T1
Valid prediction for GeneMark_model.99413_t
Valid prediction for snap_scaffold_26-snap.1089-T1
Valid prediction for Augustus_model.g37902.t1
Valid prediction for snap_scaffold_26-snap.1087-T1
Valid prediction for snap_scaffold_26-snap.1108-T1
Valid prediction for GeneMark_model.99387_t
Valid prediction for snap_scaffold_26-snap.1088-T1
Valid prediction for snap_scaffold_26-snap.1116-T1
Valid prediction for GeneMark_model.99392_t
Valid prediction for GlimmerHMM_glimmerT_56909-T1
Valid prediction for snap_scaffold_26-snap.1115-T1
Valid prediction for GeneMark_model.99383_t
Valid prediction for snap_scaffold_26-snap.1079-T1
Valid prediction for Augustus_model.g37911.t1
Valid prediction for GlimmerHMM_glimmerT_56931-T1
Valid prediction for GlimmerHMM_glimmerT_56910-T1
Valid prediction for Augustus_model.g37915.t1
Valid prediction for snap_scaffold_26-snap.1074-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27356, rend_intergenic: 25371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30275, rend_intergenic: 28642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35567, rend_intergenic: 34489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58645, rend_intergenic: 53803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60388, rend_intergenic: 58840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77436, rend_intergenic: 71472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87373, rend_intergenic: 84123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91685, rend_intergenic: 87581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96827, rend_intergenic: 93853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122063, rend_intergenic: 97144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123906, rend_intergenic: 122704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136441, rend_intergenic: 123938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143924, rend_intergenic: 142157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147875, rend_intergenic: 146725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171963, rend_intergenic: 168215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174406, rend_intergenic: 172928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187404, rend_intergenic: 174469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201362, rend_intergenic: 192069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217354, rend_intergenic: 207909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 222954
-exon list size: 940


building trellis

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44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 44 predictions from path traversal
Error with prediction: snap lend_intergenic: 27356, rend_intergenic: 25371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30275, rend_intergenic: 28642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35567, rend_intergenic: 34489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58645, rend_intergenic: 53803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60388, rend_intergenic: 58840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77436, rend_intergenic: 71472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87373, rend_intergenic: 84123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91685, rend_intergenic: 87581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96827, rend_intergenic: 93853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122063, rend_intergenic: 97144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123906, rend_intergenic: 122704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136441, rend_intergenic: 123938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143924, rend_intergenic: 142157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147875, rend_intergenic: 146725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171963, rend_intergenic: 168215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174406, rend_intergenic: 172928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187404, rend_intergenic: 174469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201362, rend_intergenic: 192069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217354, rend_intergenic: 207909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support