-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_4503721-4717088 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_26-snap.1015-T1 Valid prediction for GeneMark_model.99284_t Valid prediction for GeneMark_model.99330_t Valid prediction for GeneMark_model.99339_t Valid prediction for GlimmerHMM_glimmerT_56868-T1 Valid prediction for HiQ_model.g37878.t1 Couldn't classify 123084, 123138 Sorry, prediction pasa_asmbl_35450.p1 fails validation. (ACT) CA 123084-123138 GT AGG (ATG) AG 123240-123389 GT ATG (TCG) AG 124321-124398 GT AGG (AGA) AG 124936-124998 GT GGG (TGA) AG 125461-125559 GT GGG (AGA) AG 127184-127255 GT GAG (AAT) AG 127475-127584 GT AGG (GGT) AG 127802-127941 GT GAG (GAC) AG 128070-128154 GT GGG (CTG) AG 128327-128471 GT TGG (ATC) AG 128722-128810 GT AGG (CTG) AG 129193-129316 GT AGG (GTG) AG 130352-130548 GT CAG (GGT) AG 130792-130968 GT CGG (ATT) AG 131062-131231 GT CAG (GTA) AG 131433-132022 GT AAG (GCA) AG 132137-132276 GT AGG (GTC) AG 132427-132526 GT AGG (GAG) AG 132720-132886 GT AGG (ATC) AG 133065-133421 AG GAA add_exon() Sorry, pasa_asmbl_35450.p1 123240-123389-initial-1 is invalid. -recovered pasa_asmbl_35450.p1, initial, 123240, 123389 -recovered pasa_asmbl_35450.p1, terminal, 133065, 133421 -recovered pasa_asmbl_35450.p1, internal, 123240, 123389 -recovered pasa_asmbl_35450.p1, internal, 124321, 124398 -recovered pasa_asmbl_35450.p1, internal, 124936, 124998 -recovered pasa_asmbl_35450.p1, internal, 125461, 125559 -recovered pasa_asmbl_35450.p1, internal, 127184, 127255 -recovered pasa_asmbl_35450.p1, internal, 127475, 127584 -recovered pasa_asmbl_35450.p1, internal, 127802, 127941 -recovered pasa_asmbl_35450.p1, internal, 128070, 128154 -recovered pasa_asmbl_35450.p1, internal, 128327, 128471 -recovered pasa_asmbl_35450.p1, internal, 128722, 128810 -recovered pasa_asmbl_35450.p1, internal, 129193, 129316 -recovered pasa_asmbl_35450.p1, internal, 130352, 130548 -recovered pasa_asmbl_35450.p1, internal, 130792, 130968 -recovered pasa_asmbl_35450.p1, internal, 131062, 131231 -recovered pasa_asmbl_35450.p1, internal, 131433, 132022 -recovered pasa_asmbl_35450.p1, internal, 132137, 132276 -recovered pasa_asmbl_35450.p1, internal, 132427, 132526 -recovered pasa_asmbl_35450.p1, internal, 132720, 132886 Couldn't classify 122711, 122796 Sorry, prediction pasa_asmbl_35449.p2 fails validation. (ATG) GG 121013-121265 GT AGG (GTA) AG 122711-122796 CC GAC -recovered pasa_asmbl_35449.p2, initial, 121013, 121265 Valid prediction for snap_scaffold_26-snap.996-T1 Valid prediction for GlimmerHMM_glimmerT_56865-T1 Valid prediction for snap_scaffold_26-snap.1031-T1 Valid prediction for GlimmerHMM_glimmerT_56869-T1 Valid prediction for snap_scaffold_26-snap.1034-T1 Valid prediction for Augustus_model.g37880.t1 Valid prediction for snap_scaffold_26-snap.998-T1 Valid prediction for GeneMark_model.99296_t Valid prediction for snap_scaffold_26-snap.1013-T1 Valid prediction for GeneMark_model.99290_t Valid prediction for GeneMark_model.99315_t Valid prediction for GeneMark_model.99326_t Valid prediction for GlimmerHMM_glimmerT_56878-T1 Valid prediction for Augustus_model.g37877.t1 Valid prediction for GeneMark_model.99336_t Valid prediction for snap_scaffold_26-snap.1021-T1 Valid prediction for GlimmerHMM_glimmerT_56853-T1 Valid prediction for snap_scaffold_26-snap.999-T1 Valid prediction for Augustus_model.g37873.t1 Valid prediction for GeneMark_model.99307_t Valid prediction for GeneMark_model.99303_t Valid prediction for snap_scaffold_26-snap.1009-T1 Valid prediction for GeneMark_model.99300_t Valid prediction for snap_scaffold_26-snap.990-T1 Valid prediction for snap_scaffold_26-snap.1023-T1 Valid prediction for GeneMark_model.99287_t Valid prediction for GeneMark_model.99322_t Couldn't classify 56319, 56371 Couldn't classify 57234, 57396 Sorry, prediction pasa_asmbl_35838.p2 fails validation. (TAC) AG 56319-56371 GT AGG (AGA) AG 56557-56635 GT TGG (GAT) AG 56947-57023 GT AGG (GGG) AG 57234-57396 AA GCA -recovered pasa_asmbl_35838.p2, internal, 56319, 56371 -recovered pasa_asmbl_35838.p2, internal, 56557, 56635 -recovered pasa_asmbl_35838.p2, internal, 56947, 57023 Valid prediction for GeneMark_model.99294_t Valid prediction for GeneMark_model.99281_t Valid prediction for GeneMark_model.99320_t Valid prediction for GeneMark_model.99318_t Valid prediction for snap_scaffold_26-snap.992-T1 Valid prediction for snap_scaffold_26-snap.1030-T1 Valid prediction for GeneMark_model.99292_t Valid prediction for GlimmerHMM_glimmerT_56866-T1 Valid prediction for snap_scaffold_26-snap.988-T1 Valid prediction for GlimmerHMM_glimmerT_56872-T1 Valid prediction for GeneMark_model.99302_t Valid prediction for snap_scaffold_26-snap.1026-T1 Valid prediction for GeneMark_model.99317_t Valid prediction for snap_scaffold_26-snap.994-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_56877-T1 Valid prediction for snap_scaffold_26-snap.1012-T1 Valid prediction for GeneMark_model.99309_t Valid prediction for GeneMark_model.99289_t Valid prediction for GeneMark_model.99312_t Valid prediction for GeneMark_model.99298_t Valid prediction for GeneMark_model.99337_t Valid prediction for GeneMark_model.99324_t Valid prediction for pasa_asmbl_35853.p1 Valid prediction for snap_scaffold_26-snap.995-T1 Valid prediction for GlimmerHMM_glimmerT_56858-T1 Valid prediction for GlimmerHMM_glimmerT_56857-T1 Valid prediction for snap_scaffold_26-snap.1024-T1 Valid prediction for snap_scaffold_26-snap.1004-T1 Valid prediction for GeneMark_model.99305_t Valid prediction for GeneMark_model.99279_t Valid prediction for GeneMark_model.99328_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.99299_t Couldn't classify 44845, 44897 Couldn't classify 46728, 46808 Sorry, prediction pasa_asmbl_34856.p1 fails validation. (TTT) CT 44845-44897 GT AAG (GGA) AG 45016-45083 GT AGG (GGA) AG 45228-45310 GT GGG (AAG) AG 45706-45793 GT GGG (ACC) AG 46178-46268 GT AGG (ACC) AG 46502-46568 GT AGG (GGT) AG 46728-46808 GT TGG add_exon() Sorry, pasa_asmbl_34856.p1 46178-46268-terminal-3 is invalid. -recovered pasa_asmbl_34856.p1, terminal, 46178, 46268 -recovered pasa_asmbl_34856.p1, internal, 45016, 45083 -recovered pasa_asmbl_34856.p1, internal, 45228, 45310 -recovered pasa_asmbl_34856.p1, internal, 45706, 45793 -recovered pasa_asmbl_34856.p1, internal, 46178, 46268 -recovered pasa_asmbl_34856.p1, internal, 46502, 46568 -recovered pasa_asmbl_34856.p1, internal, 46728, 46808 Valid prediction for GlimmerHMM_glimmerT_56860-T1 Valid prediction for GeneMark_model.99321_t Valid prediction for snap_scaffold_26-snap.1008-T1 Couldn't classify 170275, 170371 Sorry, prediction pasa_asmbl_34836.p1 fails validation. (CCG) AC 170275-170371 GT GGG (AGC) AG 170691-170846 GT AGG (GTG) AG 173044-173212 GT TGG (GGA) AG 173630-173711 TA AAT -recovered pasa_asmbl_34836.p1, terminal, 173630, 173711 -recovered pasa_asmbl_34836.p1, internal, 170691, 170846 -recovered pasa_asmbl_34836.p1, internal, 173044, 173212 Valid prediction for Augustus_model.g37867.t1 Valid prediction for HiQ_model.g37874.t1 Valid prediction for snap_scaffold_26-snap.1022-T1 Valid prediction for GeneMark_model.99291_t Valid prediction for snap_scaffold_26-snap.1003-T1 Valid prediction for snap_scaffold_26-snap.993-T1 Valid prediction for GeneMark_model.99338_t Valid prediction for GeneMark_model.99297_t Valid prediction for GlimmerHMM_glimmerT_56855-T1 Valid prediction for GlimmerHMM_glimmerT_56848-T1 Valid prediction for Augustus_model.g37868.t1 Valid prediction for CodingQuarry_transcript_40232-T1 Valid prediction for snap_scaffold_26-snap.1000-T1 Valid prediction for Augustus_model.g37872.t1 Valid prediction for GeneMark_model.99314_t Valid prediction for GeneMark_model.99306_t Valid prediction for GeneMark_model.99304_t Valid prediction for snap_scaffold_26-snap.1006-T1 Valid prediction for GlimmerHMM_glimmerT_56875-T1 Couldn't classify 166821, 167052 Couldn't classify 168216, 168407 Sorry, prediction pasa_asmbl_34837.p1 fails validation. (CTC) CT 166821-167052 GT GGG (GAT) AG 167180-167247 GT AGG (GAC) AG 167571-167693 GT TGG (GCC) AG 167993-168088 GT AGG (GAT) AG 168216-168407 AC TAA -recovered pasa_asmbl_34837.p1, internal, 167180, 167247 -recovered pasa_asmbl_34837.p1, internal, 167571, 167693 -recovered pasa_asmbl_34837.p1, internal, 167993, 168088 Valid prediction for GeneMark_model.99319_t Valid prediction for GlimmerHMM_glimmerT_56861-T1 Valid prediction for GlimmerHMM_glimmerT_56863-T1 Valid prediction for GeneMark_model.99331_t Valid prediction for GlimmerHMM_glimmerT_56852-T1 Valid prediction for CodingQuarry_transcript_40230-T1 Valid prediction for GeneMark_model.99333_t Valid prediction for snap_scaffold_26-snap.989-T1 Valid prediction for GlimmerHMM_glimmerT_56876-T1 Valid prediction for snap_scaffold_26-snap.1010-T1 Valid prediction for GlimmerHMM_glimmerT_56850-T1 Couldn't classify 109469, 109634 Couldn't classify 110068, 110118 Sorry, prediction pasa_asmbl_34850.p1 fails validation. (TTG) TG 109469-109634 GT TGG (AAG) AG 109748-109941 GT GGG (ATC) AG 110068-110118 AG CCA -recovered pasa_asmbl_34850.p1, internal, 109748, 109941 Valid prediction for Augustus_model.g37879.t1 Valid prediction for Augustus_model.g37871.t1 Valid prediction for Augustus_model.g37881.t1 Valid prediction for snap_scaffold_26-snap.1029-T1 Couldn't classify 54757, 54868 Sorry, prediction pasa_asmbl_34852.p1 fails validation. (GAT) CT 54757-54868 GT AGG (AGT) AG 55154-55306 GT GGG (GAG) AG 55418-55541 GT ACG (GAT) AG 55700-55838 GT CTG (ATG) AG 55998-56078 CC AAC -recovered pasa_asmbl_34852.p1, terminal, 55998, 56078 -recovered pasa_asmbl_34852.p1, internal, 55154, 55306 -recovered pasa_asmbl_34852.p1, internal, 55418, 55541 -recovered pasa_asmbl_34852.p1, internal, 55700, 55838 Couldn't classify 189663, 189713 Sorry, prediction pasa_asmbl_35134.p1 fails validation. (TCT) AC 189663-189713 GT AGG (GAG) AG 189872-189956 GT CAG (AGC) AG 191007-191059 GT TGG (TAC) AG 191512-191646 GT AGG (ATC) AG 191773-191849 GT AGG (GAA) AG 192006-192049 GT TGG (AGG) AG 192265-192425 GT AGG (AAT) AG 192555-192661 GT AAG (GGC) AG 192902-193022 GT AGG (AAT) AG 193278-193346 GG GAG -recovered pasa_asmbl_35134.p1, terminal, 193278, 193346 -recovered pasa_asmbl_35134.p1, internal, 189872, 189956 -recovered pasa_asmbl_35134.p1, internal, 191007, 191059 -recovered pasa_asmbl_35134.p1, internal, 191512, 191646 -recovered pasa_asmbl_35134.p1, internal, 191773, 191849 -recovered pasa_asmbl_35134.p1, internal, 192006, 192049 -recovered pasa_asmbl_35134.p1, internal, 192265, 192425 -recovered pasa_asmbl_35134.p1, internal, 192555, 192661 -recovered pasa_asmbl_35134.p1, internal, 192902, 193022 Valid prediction for snap_scaffold_26-snap.1014-T1 Valid prediction for GlimmerHMM_glimmerT_56859-T1 Valid prediction for CodingQuarry_transcript_40233-T1 Couldn't classify 204845, 204913 Sorry, prediction pasa_asmbl_34832.p1 fails validation. (ATG) GG 201351-201491 GT AGG (AAC) AG 201608-201664 GT AGG (GTG) AG 202623-202671 GT TGG (TGA) AG 203484-203581 GT CTG (GTT) AG 204413-204544 GT AGG (AAT) AG 204652-204738 GT TGG (AGG) AG 204845-204913 GT CGG -recovered pasa_asmbl_34832.p1, initial, 201351, 201491 -recovered pasa_asmbl_34832.p1, internal, 201608, 201664 -recovered pasa_asmbl_34832.p1, internal, 202623, 202671 -recovered pasa_asmbl_34832.p1, internal, 203484, 203581 -recovered pasa_asmbl_34832.p1, internal, 204413, 204544 -recovered pasa_asmbl_34832.p1, internal, 204652, 204738 -recovered pasa_asmbl_34832.p1, internal, 204845, 204913 Couldn't classify 114619, 114702 Couldn't classify 115670, 115693 Sorry, prediction pasa_asmbl_34848.p1 fails validation. (CAC) GT 114619-114702 GC AGG (AGC) AG 114885-115073 GT AGG (GGT) AG 115285-115458 GT GGG (ATT) AG 115670-115693 GT CGG -recovered pasa_asmbl_34848.p1, internal, 114885, 115073 -recovered pasa_asmbl_34848.p1, internal, 115285, 115458 -recovered pasa_asmbl_34848.p1, internal, 115670, 115693 Valid prediction for GeneMark_model.99286_t Valid prediction for snap_scaffold_26-snap.1011-T1 Couldn't classify 52346, 52638 Couldn't classify 54243, 54498 Sorry, prediction pasa_asmbl_34853.p1 fails validation. (TCC) AG 52346-52638 GT AGG (GTT) AG 54243-54498 GG ATG -recovered pasa_asmbl_34853.p1, internal, 52346, 52638 Valid prediction for GeneMark_model.99334_t Valid prediction for GlimmerHMM_glimmerT_56854-T1 Valid prediction for snap_scaffold_26-snap.1017-T1 Valid prediction for GeneMark_model.99310_t Valid prediction for snap_scaffold_26-snap.1018-T1 Valid prediction for HiQ_model.g37875.t1 Valid prediction for CodingQuarry_transcript_40238-T1 Valid prediction for GeneMark_model.99329_t Valid prediction for GeneMark_model.99332_t Valid prediction for snap_scaffold_26-snap.1025-T1 Valid prediction for GlimmerHMM_glimmerT_56849-T1 Valid prediction for GeneMark_model.99288_t Valid prediction for GeneMark_model.99311_t Valid prediction for pasa_asmbl_34841.p1 Valid prediction for snap_scaffold_26-snap.1001-T1 Valid prediction for snap_scaffold_26-snap.1032-T1 Valid prediction for GeneMark_model.99327_t Valid prediction for snap_scaffold_26-snap.1007-T1 Valid prediction for Augustus_model.g37882.t1 Couldn't classify 187854, 188326 Sorry, prediction pasa_asmbl_34834.p1 fails validation. (ATG) TG 186107-186134 GT AGG (GTG) AG 187854-188326 TG CGT -recovered pasa_asmbl_34834.p1, initial, 186107, 186134 Valid prediction for CodingQuarry_transcript_40234-T1 Valid prediction for GeneMark_model.99325_t Valid prediction for CodingQuarry_transcript_40235-T1 Valid prediction for GlimmerHMM_glimmerT_56870-T1 Valid prediction for GeneMark_model.99293_t Valid prediction for CodingQuarry_transcript_40237-T1 Valid prediction for GlimmerHMM_glimmerT_56856-T1 Valid prediction for GeneMark_model.99316_t Valid prediction for pasa_asmbl_34857.p2 Valid prediction for GlimmerHMM_glimmerT_56871-T1 Couldn't classify 123901, 124200 Sorry, prediction pasa_asmbl_34842.p1 fails validation. (ATG) CA 117741-117845 GT AGG (GTG) AG 120543-120714 GT GGG (ACC) AG 123463-123545 GT AGG (AAC) AG 123901-124200 CG CCC -recovered pasa_asmbl_34842.p1, initial, 117741, 117845 -recovered pasa_asmbl_34842.p1, internal, 120543, 120714 -recovered pasa_asmbl_34842.p1, internal, 123463, 123545 Valid prediction for GlimmerHMM_glimmerT_56864-T1 Valid prediction for snap_scaffold_26-snap.1020-T1 Valid prediction for GeneMark_model.99282_t Valid prediction for snap_scaffold_26-snap.1005-T1 Valid prediction for snap_scaffold_26-snap.991-T1 Valid prediction for GeneMark_model.99323_t Couldn't classify 110543, 110584 Sorry, prediction pasa_asmbl_34849.p1 fails validation. (AAA) CT 110543-110584 GT CGG (GTG) AG 110666-110923 GT AGG (ACT) AG 111020-111130 GT TGG (GTT) AG 111283-111537 TG GAT -recovered pasa_asmbl_34849.p1, terminal, 111283, 111537 -recovered pasa_asmbl_34849.p1, internal, 110666, 110923 -recovered pasa_asmbl_34849.p1, internal, 111020, 111130 Valid prediction for GlimmerHMM_glimmerT_56873-T1 Valid prediction for GeneMark_model.99301_t Couldn't classify 47382, 47459 Couldn't classify 48346, 48507 Sorry, prediction pasa_asmbl_34855.p1 fails validation. (ATC) AC 47382-47459 GT AGG (GAC) AG 47541-47642 GT AGG (TGG) AG 47889-47935 GT AAG (GTT) AG 48089-48224 GT AGG (GAT) AG 48346-48507 GG AGG -recovered pasa_asmbl_34855.p1, internal, 47541, 47642 -recovered pasa_asmbl_34855.p1, internal, 47889, 47935 -recovered pasa_asmbl_34855.p1, internal, 48089, 48224 Valid prediction for GlimmerHMM_glimmerT_56874-T1 Valid prediction for snap_scaffold_26-snap.1028-T1 Valid prediction for snap_scaffold_26-snap.1002-T1 Couldn't classify 50868, 50974 Couldn't classify 51537, 51766 Sorry, prediction pasa_asmbl_34854.p1 fails validation. (GGA) AG 50868-50974 GT GGG (GAC) AG 51074-51306 GT CAG (GCA) AG 51537-51766 CT AGC -recovered pasa_asmbl_34854.p1, internal, 50868, 50974 -recovered pasa_asmbl_34854.p1, internal, 51074, 51306 Valid prediction for pasa_asmbl_34862.p1 Couldn't classify 131966, 132047 Sorry, prediction pasa_asmbl_34840.p1 fails validation. (CTG) AG 131966-132047 GT AGG (TGT) AG 132628-132752 GT AGG (TGT) AG 135719-135830 GT ATG (GTA) AG 137904-138049 GT AAG (TTA) AG 138424-138563 GT AGG (TTA) AG 139204-139281 GT GGG (GTA) AG 139415-139509 GT AGG (CTG) AG 139628-139753 GT AGG (TGA) AG 139881-139958 GT AGG (GTG) AG 141217-141301 GT AGG (GGA) AG 141863-141960 GT TGG (CCA) AG 144227-144253 GT AGG (CCA) AG 145530-145675 AC AGA -recovered pasa_asmbl_34840.p1, terminal, 145530, 145675 -recovered pasa_asmbl_34840.p1, internal, 131966, 132047 -recovered pasa_asmbl_34840.p1, internal, 132628, 132752 -recovered pasa_asmbl_34840.p1, internal, 135719, 135830 -recovered pasa_asmbl_34840.p1, internal, 137904, 138049 -recovered pasa_asmbl_34840.p1, internal, 138424, 138563 -recovered pasa_asmbl_34840.p1, internal, 139204, 139281 -recovered pasa_asmbl_34840.p1, internal, 139415, 139509 -recovered pasa_asmbl_34840.p1, internal, 139628, 139753 -recovered pasa_asmbl_34840.p1, internal, 139881, 139958 -recovered pasa_asmbl_34840.p1, internal, 141217, 141301 -recovered pasa_asmbl_34840.p1, internal, 141863, 141960 -recovered pasa_asmbl_34840.p1, internal, 144227, 144253 Valid prediction for GlimmerHMM_glimmerT_56862-T1 Couldn't classify 188109, 188325 Sorry, prediction CodingQuarry_transcript_40231-T1 fails validation. (ATG) TG 186107-186134 GT AGG (GTG) AG 187854-188012 GC GAG (CCA) GA 188109-188325 GT ACG (GAA) AG 189659-189713 GT AGG (GAG) AG 189872-189956 GT CAG (AGC) AG 191007-191059 GT TGG (TAC) AG 191512-191646 GT AGG (ATC) AG 191773-191849 GT AGG (GAA) AG 192006-192049 GT TGG (AGG) AG 192265-192425 GT AGG (AAT) AG 192555-192661 GT AAG (GGC) AG 192902-193022 GT AGG (AAT) AG 193278-193346 GG GAG -recovered CodingQuarry_transcript_40231-T1, initial, 186107, 186134 add_exon() Sorry, CodingQuarry_transcript_40231-T1 187854-188012-terminal-1 is invalid. -recovered CodingQuarry_transcript_40231-T1, terminal, 187854, 188012 -recovered CodingQuarry_transcript_40231-T1, terminal, 193278, 193346 -recovered CodingQuarry_transcript_40231-T1, internal, 187854, 188012 -recovered CodingQuarry_transcript_40231-T1, internal, 189659, 189713 -recovered CodingQuarry_transcript_40231-T1, internal, 189872, 189956 -recovered CodingQuarry_transcript_40231-T1, internal, 191007, 191059 -recovered CodingQuarry_transcript_40231-T1, internal, 191512, 191646 -recovered CodingQuarry_transcript_40231-T1, internal, 191773, 191849 -recovered CodingQuarry_transcript_40231-T1, internal, 192006, 192049 -recovered CodingQuarry_transcript_40231-T1, internal, 192265, 192425 -recovered CodingQuarry_transcript_40231-T1, internal, 192555, 192661 -recovered CodingQuarry_transcript_40231-T1, internal, 192902, 193022 Valid prediction for GeneMark_model.99283_t Valid prediction for snap_scaffold_26-snap.1027-T1 Valid prediction for snap_scaffold_26-snap.987-T1 Valid prediction for HiQ_model.g37884.t1 Valid prediction for HiQ_model.g37869.t1 Valid prediction for snap_scaffold_26-snap.1016-T1 Valid prediction for GeneMark_model.99295_t Valid prediction for GeneMark_model.99335_t Valid prediction for GeneMark_model.99308_t Valid prediction for Augustus_model.g37876.t1 Valid prediction for snap_scaffold_26-snap.997-T1 Valid prediction for GeneMark_model.99280_t Valid prediction for GlimmerHMM_glimmerT_56867-T1 Valid prediction for GeneMark_model.99313_t Valid prediction for snap_scaffold_26-snap.1019-T1 Valid prediction for GlimmerHMM_glimmerT_56851-T1 Couldn't classify 77995, 78008 Sorry, prediction pasa_asmbl_34851.p1 fails validation. (CTG) AC 77995-78008 GT CGG (CTT) AG 78336-78463 GT GGG (GCT) AG 78609-78710 GT AGG (GCT) AG 78839-78999 AC GAA -recovered pasa_asmbl_34851.p1, terminal, 78839, 78999 -recovered pasa_asmbl_34851.p1, internal, 78336, 78463 -recovered pasa_asmbl_34851.p1, internal, 78609, 78710 Valid prediction for Augustus_model.g37883.t1 Valid prediction for GeneMark_model.99278_t Valid prediction for snap_scaffold_26-snap.1033-T1 Valid prediction for Augustus_model.g37870.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18779, rend_intergenic: 6420 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27262, rend_intergenic: 21231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30479, rend_intergenic: 28469 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32146, rend_intergenic: 30627 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37090, rend_intergenic: 32596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52695, rend_intergenic: 37634 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74094, rend_intergenic: 68970 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85486, rend_intergenic: 84106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111505, rend_intergenic: 106907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118853, rend_intergenic: 111681 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129539, rend_intergenic: 121013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137309, rend_intergenic: 134370 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154135, rend_intergenic: 140969 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161830, rend_intergenic: 156687 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173512, rend_intergenic: 164112 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177562, rend_intergenic: 176604 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181991, rend_intergenic: 178950 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207510, rend_intergenic: 206644 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 213368 -exon list size: 965 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 33 predictions from path traversal Error with prediction: snap lend_intergenic: 18779, rend_intergenic: 6420 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27262, rend_intergenic: 21231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30479, rend_intergenic: 28469 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32146, rend_intergenic: 30627 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37090, rend_intergenic: 32596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52695, rend_intergenic: 37634 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74094, rend_intergenic: 68970 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85486, rend_intergenic: 84106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111505, rend_intergenic: 106907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118853, rend_intergenic: 111681 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129539, rend_intergenic: 121013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137309, rend_intergenic: 134370 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154135, rend_intergenic: 140969 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161830, rend_intergenic: 156687 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 173512, rend_intergenic: 164112 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177562, rend_intergenic: 176604 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181991, rend_intergenic: 178950 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207510, rend_intergenic: 206644 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 22 predictions persist after filtering for low support