-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_4281856-4507699 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 177311, 177322 Sorry, prediction pasa_asmbl_35434.p1 fails validation. (ATG) TT 174220-174468 GT AGG (GCT) AG 174610-174833 GT AGG (CCG) AG 174947-175046 GT AGG (ACT) AG 175140-175257 GT GGG (GAA) AG 175405-175547 GT AGG (GGC) AG 175700-175852 GT AGG (TTG) AG 176219-176313 GT AGG (GGT) AG 176430-176670 GT AGG (GCG) AG 176773-176865 GT AGG (GTG) AG 177311-177322 TG TCT -recovered pasa_asmbl_35434.p1, initial, 174220, 174468 -recovered pasa_asmbl_35434.p1, internal, 174610, 174833 -recovered pasa_asmbl_35434.p1, internal, 174947, 175046 -recovered pasa_asmbl_35434.p1, internal, 175140, 175257 -recovered pasa_asmbl_35434.p1, internal, 175405, 175547 -recovered pasa_asmbl_35434.p1, internal, 175700, 175852 -recovered pasa_asmbl_35434.p1, internal, 176219, 176313 -recovered pasa_asmbl_35434.p1, internal, 176430, 176670 -recovered pasa_asmbl_35434.p1, internal, 176773, 176865 Couldn't classify 183839, 183932 Couldn't classify 184550, 184585 Sorry, prediction pasa_asmbl_35438.p1 fails validation. (GTG) TG 183839-183932 GT AGG (AGT) AG 184054-184116 GT TGG (AAG) AG 184219-184349 GT AGG (ATG) AG 184550-184585 GT CAG -recovered pasa_asmbl_35438.p1, initial, 184550, 184585 -recovered pasa_asmbl_35438.p1, internal, 184054, 184116 -recovered pasa_asmbl_35438.p1, internal, 184219, 184349 -recovered pasa_asmbl_35438.p1, internal, 184550, 184585 Valid prediction for HiQ_model.g37864.t1 Valid prediction for pasa_asmbl_35416.p1 Valid prediction for GlimmerHMM_glimmerT_56836-T1 Valid prediction for GlimmerHMM_glimmerT_56841-T1 Couldn't classify 71009, 71031 Couldn't classify 71722, 71788 Sorry, prediction pasa_asmbl_35412.p1 fails validation. (AGG) CC 71009-71031 GT GGG (GAG) AG 71181-71483 GT AGG (GTA) AG 71722-71788 GA GAG -recovered pasa_asmbl_35412.p1, internal, 71181, 71483 Valid prediction for GeneMark_model.99250_t Valid prediction for snap_scaffold_26-snap.965-T1 Valid prediction for GlimmerHMM_glimmerT_56818-T1 Valid prediction for snap_scaffold_26-snap.960-T1 Valid prediction for GeneMark_model.99222_t Valid prediction for CodingQuarry_transcript_40226-T1 Couldn't classify 167350, 167471 Sorry, prediction pasa_asmbl_35432.p1 fails validation. (GAG) AG 167350-167471 GT ATG (GGC) AG 167751-167905 GT CGG (CTC) AG 167996-168124 GT TGG (ATA) AG 168483-168588 GT AGG (GTG) AG 168691-168823 GT AGG (AAA) AG 169008-169094 GT AGG (GCC) AG 169184-169465 GT GGG (TCA) AG 169742-169996 GT AGG (GTA) AG 171175-171232 GT AGG (ACA) AG 171339-171477 GT TGG (GGT) AG 171586-171759 GT AGG (AAC) AG 171884-171977 GT TGG (AAG) AG 172085-172273 GT AGG (GAC) AG 172533-172601 AA AAA -recovered pasa_asmbl_35432.p1, terminal, 172533, 172601 -recovered pasa_asmbl_35432.p1, internal, 167350, 167471 -recovered pasa_asmbl_35432.p1, internal, 167751, 167905 -recovered pasa_asmbl_35432.p1, internal, 167996, 168124 -recovered pasa_asmbl_35432.p1, internal, 168483, 168588 -recovered pasa_asmbl_35432.p1, internal, 168691, 168823 -recovered pasa_asmbl_35432.p1, internal, 169008, 169094 -recovered pasa_asmbl_35432.p1, internal, 169184, 169465 -recovered pasa_asmbl_35432.p1, internal, 169742, 169996 -recovered pasa_asmbl_35432.p1, internal, 171175, 171232 -recovered pasa_asmbl_35432.p1, internal, 171339, 171477 -recovered pasa_asmbl_35432.p1, internal, 171586, 171759 -recovered pasa_asmbl_35432.p1, internal, 171884, 171977 -recovered pasa_asmbl_35432.p1, internal, 172085, 172273 Valid prediction for GeneMark_model.99255_t Valid prediction for GeneMark_model.99249_t Valid prediction for GlimmerHMM_glimmerT_56839-T1 Valid prediction for HiQ_model.g37862.t1 Valid prediction for GlimmerHMM_glimmerT_56820-T1 Valid prediction for GeneMark_model.99230_t Valid prediction for GeneMark_model.99240_t Valid prediction for snap_scaffold_26-snap.985-T1 Couldn't classify 99288, 99388 Couldn't classify 100800, 100845 Sorry, prediction pasa_asmbl_35419.p1 fails validation. (TGT) GC 99288-99388 GT AGG (GCG) AG 99496-99558 GT GGG (GAA) AG 99653-99709 GT CGG (TGC) AG 99794-99873 GT CGG (GTG) AG 99958-100066 GT AGG (TCT) AG 100149-100232 GT AGG (GTT) AG 100327-100384 GT AGG (ATT) AG 100531-100670 GT ATG (GTG) AG 100800-100845 CC CGC -recovered pasa_asmbl_35419.p1, internal, 99496, 99558 -recovered pasa_asmbl_35419.p1, internal, 99653, 99709 -recovered pasa_asmbl_35419.p1, internal, 99794, 99873 -recovered pasa_asmbl_35419.p1, internal, 99958, 100066 -recovered pasa_asmbl_35419.p1, internal, 100149, 100232 -recovered pasa_asmbl_35419.p1, internal, 100327, 100384 -recovered pasa_asmbl_35419.p1, internal, 100531, 100670 Valid prediction for GeneMark_model.99253_t Valid prediction for HiQ_model.g37858.t1 Couldn't classify 177685, 177856 Sorry, prediction pasa_asmbl_35859.p1 fails validation. (ACC) AG 177685-177856 GT GGG (GTG) AG 177988-178054 GT AGG (GTG) AG 178126-178240 TT GAT -recovered pasa_asmbl_35859.p1, terminal, 178126, 178240 -recovered pasa_asmbl_35859.p1, internal, 177685, 177856 -recovered pasa_asmbl_35859.p1, internal, 177988, 178054 Valid prediction for snap_scaffold_26-snap.943-T1 Valid prediction for GlimmerHMM_glimmerT_56842-T1 Couldn't classify 138097, 138257 Sorry, prediction pasa_asmbl_35423.p1 fails validation. (TCT) AG 138097-138257 GT AGG (AAA) AG 138350-138474 GT AGG (GTA) AG 138580-138709 GT AAG (AGA) AG 138852-139000 GT TGG (CGC) AG 139422-139609 GT CTG (ATT) AG 139912-140022 GT GTG (GGC) AG 140214-140315 GT AGG (GAT) AG 140474-140549 GT AGG (GCG) AG 140657-140784 GT TGG (ACT) AG 141044-141238 GA GAG -recovered pasa_asmbl_35423.p1, terminal, 141044, 141238 -recovered pasa_asmbl_35423.p1, internal, 138097, 138257 -recovered pasa_asmbl_35423.p1, internal, 138350, 138474 -recovered pasa_asmbl_35423.p1, internal, 138580, 138709 -recovered pasa_asmbl_35423.p1, internal, 138852, 139000 -recovered pasa_asmbl_35423.p1, internal, 139422, 139609 -recovered pasa_asmbl_35423.p1, internal, 139912, 140022 -recovered pasa_asmbl_35423.p1, internal, 140214, 140315 -recovered pasa_asmbl_35423.p1, internal, 140474, 140549 -recovered pasa_asmbl_35423.p1, internal, 140657, 140784 Valid prediction for pasa_asmbl_35425.p2 Valid prediction for GeneMark_model.99268_t Valid prediction for HiQ_model.g37859.t1 Valid prediction for GeneMark_model.99277_t Valid prediction for Augustus_model.g37852.t1 Couldn't classify 97134, 97946 Sorry, prediction pasa_asmbl_35418.p1 fails validation. (CCC) TC 97134-97946 CT GAC Couldn't classify 72919, 73044 Couldn't classify 73885, 74061 Sorry, prediction pasa_asmbl_35413.p1 fails validation. (CAG) CT 72919-73044 GT AGG (GTG) AG 73336-73545 GT AGG (GAG) AG 73885-74061 CG CCC -recovered pasa_asmbl_35413.p1, internal, 73336, 73545 Valid prediction for Augustus_model.g37846.t1 Couldn't classify 144471, 144635 Sorry, prediction pasa_asmbl_35424.p1 fails validation. (GAC) CG 144471-144635 GT CTG (ATT) AG 145116-145226 GT GTG (GGC) AG 145418-145519 GT AGG (GAT) AG 145660-145735 GT AGG (GCG) AG 145843-145970 GT TGG (ACT) AG 146122-146316 GA GAG -recovered pasa_asmbl_35424.p1, terminal, 146122, 146316 -recovered pasa_asmbl_35424.p1, internal, 145116, 145226 -recovered pasa_asmbl_35424.p1, internal, 145418, 145519 -recovered pasa_asmbl_35424.p1, internal, 145660, 145735 -recovered pasa_asmbl_35424.p1, internal, 145843, 145970 Couldn't classify 184645, 184687 Sorry, prediction pasa_asmbl_35439.p1 fails validation. (CAT) CT 184645-184687 GT ATG (ATG) AG 184790-184911 GT CAG (GTG) AG 185043-185196 GT AGG (ATT) AG 188085-188165 GT CAG (ATA) AG 188246-188313 GT AGG (CTG) AG 188395-188586 GT GAG add_exon() Sorry, pasa_asmbl_35439.p1 184790-184911-initial-1 is invalid. -recovered pasa_asmbl_35439.p1, initial, 184790, 184911 -recovered pasa_asmbl_35439.p1, terminal, 188395, 188586 -recovered pasa_asmbl_35439.p1, internal, 184790, 184911 -recovered pasa_asmbl_35439.p1, internal, 185043, 185196 -recovered pasa_asmbl_35439.p1, internal, 188085, 188165 -recovered pasa_asmbl_35439.p1, internal, 188246, 188313 -recovered pasa_asmbl_35439.p1, internal, 188395, 188586 Couldn't classify 181398, 181537 Sorry, prediction pasa_asmbl_35436.p1 fails validation. (ATG) AA 178885-178926 GT AGG (TGC) AG 179347-179499 GT GCG (ATT) AG 180160-180212 GT TTG (TTT) AG 180758-180815 GT CTG (GGC) AG 181190-181295 GT TGG (GGG) AG 181398-181537 GG GAG -recovered pasa_asmbl_35436.p1, initial, 178885, 178926 -recovered pasa_asmbl_35436.p1, internal, 179347, 179499 -recovered pasa_asmbl_35436.p1, internal, 180160, 180212 -recovered pasa_asmbl_35436.p1, internal, 180758, 180815 -recovered pasa_asmbl_35436.p1, internal, 181190, 181295 Valid prediction for snap_scaffold_26-snap.957-T1 Valid prediction for Augustus_model.g37860.t1 Valid prediction for Augustus_model.g37861.t1 Valid prediction for snap_scaffold_26-snap.948-T1 Valid prediction for snap_scaffold_26-snap.976-T1 Valid prediction for Augustus_model.g37844.t1 Valid prediction for snap_scaffold_26-snap.971-T1 Valid prediction for snap_scaffold_26-snap.959-T1 Valid prediction for CodingQuarry_transcript_40225-T1 Couldn't classify 76391, 76479 Couldn't classify 77642, 77676 Sorry, prediction pasa_asmbl_35414.p1 fails validation. (CTG) TG 76391-76479 GT AGG (GTA) AG 76892-77112 GT AGG (TGT) AG 77642-77676 AA TGA -recovered pasa_asmbl_35414.p1, internal, 76892, 77112 Valid prediction for GlimmerHMM_glimmerT_56819-T1 Valid prediction for snap_scaffold_26-snap.949-T1 Valid prediction for GeneMark_model.99228_t Couldn't classify 102737, 102845 Sorry, prediction pasa_asmbl_35421.p1 fails validation. (TCA) CC 102737-102845 GT AGG (GTC) AG 102939-103108 GT AGG (GAG) AG 103247-103530 GT AGG (TTA) AG 103861-104010 GT CTG (CTA) AG 104311-104416 GT AGG (ATC) AG 104738-104818 GT AGG (GTG) AG 105385-105501 GA AGG -recovered pasa_asmbl_35421.p1, terminal, 105385, 105501 -recovered pasa_asmbl_35421.p1, internal, 102939, 103108 -recovered pasa_asmbl_35421.p1, internal, 103247, 103530 -recovered pasa_asmbl_35421.p1, internal, 103861, 104010 -recovered pasa_asmbl_35421.p1, internal, 104311, 104416 -recovered pasa_asmbl_35421.p1, internal, 104738, 104818 Valid prediction for HiQ_model.g37851.t1 Valid prediction for snap_scaffold_26-snap.956-T1 Valid prediction for snap_scaffold_26-snap.963-T1 Valid prediction for snap_scaffold_26-snap.958-T1 Valid prediction for snap_scaffold_26-snap.953-T1 Valid prediction for snap_scaffold_26-snap.982-T1 Valid prediction for snap_scaffold_26-snap.973-T1 Valid prediction for GlimmerHMM_glimmerT_56840-T1 Valid prediction for GeneMark_model.99225_t Valid prediction for GlimmerHMM_glimmerT_56829-T1 Valid prediction for snap_scaffold_26-snap.951-T1 Valid prediction for GeneMark_model.99243_t Valid prediction for snap_scaffold_26-snap.970-T1 Valid prediction for GlimmerHMM_glimmerT_56844-T1 Valid prediction for HiQ_model.g37848.t1 Valid prediction for snap_scaffold_26-snap.966-T1 Valid prediction for CodingQuarry_transcript_40227-T1 Valid prediction for GeneMark_model.99227_t Couldn't classify 75565, 75651 Couldn't classify 76256, 76312 Sorry, prediction pasa_asmbl_35842.p1 fails validation. (CTG) AC 75565-75651 GT CGG (GTT) AG 75777-75953 GT AGG (GAG) AG 76256-76312 CT GGC -recovered pasa_asmbl_35842.p1, internal, 75777, 75953 Valid prediction for snap_scaffold_26-snap.941-T1 Valid prediction for GeneMark_model.99231_t Valid prediction for GeneMark_model.99264_t Couldn't classify 100960, 101001 Couldn't classify 102440, 102451 Sorry, prediction pasa_asmbl_35420.p1 fails validation. (TCC) AC 100960-101001 GT AGG (GAT) AG 101131-101175 GT TGG (ATG) AG 101776-101886 GT AGG (TTT) AG 102254-102346 GT AGG (AGG) AG 102440-102451 GT GGG -recovered pasa_asmbl_35420.p1, initial, 101776, 101886 -recovered pasa_asmbl_35420.p1, internal, 101131, 101175 -recovered pasa_asmbl_35420.p1, internal, 101776, 101886 -recovered pasa_asmbl_35420.p1, internal, 102254, 102346 -recovered pasa_asmbl_35420.p1, internal, 102440, 102451 Valid prediction for GeneMark_model.99271_t Valid prediction for pasa_asmbl_35409.p1 Valid prediction for GlimmerHMM_glimmerT_56846-T1 Valid prediction for snap_scaffold_26-snap.961-T1 Valid prediction for GlimmerHMM_glimmerT_56815-T1 Valid prediction for snap_scaffold_26-snap.945-T1 Valid prediction for pasa_asmbl_35427.p1 Valid prediction for snap_scaffold_26-snap.984-T1 Valid prediction for Augustus_model.g37843.t1 Valid prediction for GlimmerHMM_glimmerT_56837-T1 Couldn't classify 166209, 166335 Sorry, prediction pasa_asmbl_35431.p2 fails validation. (ATG) TC 162538-162605 GT TCG (GAC) AG 163917-163970 GT AGG (GGA) AG 164184-164218 GT AGG (AAA) AG 164466-164534 GT AAG (ACG) AG 164637-164727 GT TCG (GGG) AG 164837-164945 GT AGG (GTG) AG 165187-165346 GT TGG (GAA) AG 165988-166099 GT GTG (CAA) AG 166209-166335 TA GGT -recovered pasa_asmbl_35431.p2, initial, 162538, 162605 -recovered pasa_asmbl_35431.p2, internal, 163917, 163970 -recovered pasa_asmbl_35431.p2, internal, 164184, 164218 -recovered pasa_asmbl_35431.p2, internal, 164466, 164534 -recovered pasa_asmbl_35431.p2, internal, 164637, 164727 -recovered pasa_asmbl_35431.p2, internal, 164837, 164945 -recovered pasa_asmbl_35431.p2, internal, 165187, 165346 -recovered pasa_asmbl_35431.p2, internal, 165988, 166099 Valid prediction for GeneMark_model.99238_t Valid prediction for CodingQuarry_transcript_40228-T1 Valid prediction for HiQ_model.g37840.t1 Valid prediction for GeneMark_model.99269_t Valid prediction for GeneMark_model.99275_t Valid prediction for GlimmerHMM_glimmerT_56826-T1 Valid prediction for GeneMark_model.99245_t Valid prediction for GlimmerHMM_glimmerT_56830-T1 Valid prediction for CodingQuarry_transcript_40219-T1 Valid prediction for GlimmerHMM_glimmerT_56838-T1 Valid prediction for GlimmerHMM_glimmerT_56828-T1 Valid prediction for GeneMark_model.99261_t Valid prediction for Augustus_model.g37853.t1 Valid prediction for GeneMark_model.99233_t Valid prediction for snap_scaffold_26-snap.974-T1 Couldn't classify 200037, 200234 Sorry, prediction pasa_asmbl_35443.p1 fails validation. (GAA) GT 200037-200234 GT AGG (ATT) AG 200761-200994 GT AGG (AAA) AG 201233-201304 GT AGG (CTG) AG 201743-202015 TG AGT -recovered pasa_asmbl_35443.p1, terminal, 201743, 202015 -recovered pasa_asmbl_35443.p1, internal, 200761, 200994 -recovered pasa_asmbl_35443.p1, internal, 201233, 201304 Valid prediction for GeneMark_model.99257_t Valid prediction for Augustus_model.g37856.t1 Valid prediction for snap_scaffold_26-snap.944-T1 Valid prediction for GeneMark_model.99266_t Valid prediction for Augustus_model.g37850.t1 Valid prediction for snap_scaffold_26-snap.946-T1 Valid prediction for GeneMark_model.99251_t Valid prediction for CodingQuarry_transcript_40223-T1 Valid prediction for GeneMark_model.99247_t Valid prediction for GeneMark_model.99262_t Valid prediction for snap_scaffold_26-snap.975-T1 Valid prediction for CodingQuarry_transcript_40224-T1 Valid prediction for Augustus_model.g37857.t1 Valid prediction for GeneMark_model.99258_t Valid prediction for Augustus_model.g37849.t1 Valid prediction for snap_scaffold_26-snap.969-T1 Valid prediction for snap_scaffold_26-snap.978-T1 Couldn't classify 171852, 171977 Sorry, prediction pasa_asmbl_35433.p1 fails validation. (GTG) CT 171852-171977 GT TGG (AAG) AG 172085-172273 GT AGG (GAC) AG 172533-172601 AA AAA -recovered pasa_asmbl_35433.p1, terminal, 172533, 172601 -recovered pasa_asmbl_35433.p1, internal, 172085, 172273 Valid prediction for GeneMark_model.99254_t Valid prediction for GlimmerHMM_glimmerT_56834-T1 Valid prediction for snap_scaffold_26-snap.979-T1 Valid prediction for snap_scaffold_26-snap.967-T1 Couldn't classify 78315, 78412 Sorry, prediction pasa_asmbl_35415.p1 fails validation. (TCC) GT 78315-78412 GT AGG (TAT) AG 78518-78650 GT AGG (GAT) AG 78871-79069 GT AGG (CCT) AG 79344-79472 GT TGG (GTA) AG 79596-79789 GT AGG (GTC) AG 80054-80254 GT AGG (GAT) AG 80489-80614 GT TGG (GTG) AG 80742-80831 GT AGG (AGC) AG 80931-81056 CG GAC -recovered pasa_asmbl_35415.p1, terminal, 80931, 81056 -recovered pasa_asmbl_35415.p1, internal, 78518, 78650 -recovered pasa_asmbl_35415.p1, internal, 78871, 79069 -recovered pasa_asmbl_35415.p1, internal, 79344, 79472 -recovered pasa_asmbl_35415.p1, internal, 79596, 79789 -recovered pasa_asmbl_35415.p1, internal, 80054, 80254 -recovered pasa_asmbl_35415.p1, internal, 80489, 80614 -recovered pasa_asmbl_35415.p1, internal, 80742, 80831 Valid prediction for pasa_asmbl_35429.p1 Valid prediction for GeneMark_model.99260_t Valid prediction for GlimmerHMM_glimmerT_56835-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.99248_t Valid prediction for snap_scaffold_26-snap.952-T1 Valid prediction for GeneMark_model.99221_t Valid prediction for GlimmerHMM_glimmerT_56827-T1 Valid prediction for GlimmerHMM_glimmerT_56833-T1 Valid prediction for GeneMark_model.99246_t Valid prediction for GlimmerHMM_glimmerT_56812-T1 Valid prediction for GeneMark_model.99232_t Valid prediction for pasa_asmbl_34825.p1 Couldn't classify 32139, 32179 Couldn't classify 33766, 33810 Sorry, prediction pasa_asmbl_34829.p1 fails validation. (AAC) AG 32139-32179 GT AAG (TTT) AG 32277-32376 GT TGG (CTC) AG 32476-32592 GT AGG (AGA) AG 33406-33530 GT AGG (CCT) AG 33637-33685 GT AGG (GCC) AG 33766-33810 AC CCA -recovered pasa_asmbl_34829.p1, terminal, 32139, 32179 -recovered pasa_asmbl_34829.p1, internal, 32139, 32179 -recovered pasa_asmbl_34829.p1, internal, 32277, 32376 -recovered pasa_asmbl_34829.p1, internal, 32476, 32592 -recovered pasa_asmbl_34829.p1, internal, 33406, 33530 -recovered pasa_asmbl_34829.p1, internal, 33637, 33685 Valid prediction for GeneMark_model.99242_t Valid prediction for GeneMark_model.99237_t Valid prediction for GeneMark_model.99236_t Valid prediction for GeneMark_model.99263_t Valid prediction for Augustus_model.g37855.t1 Valid prediction for CodingQuarry_transcript_40221-T1 Valid prediction for CodingQuarry_transcript_40222-T1 Valid prediction for GlimmerHMM_glimmerT_56824-T1 Valid prediction for GeneMark_model.99223_t Valid prediction for Augustus_model.g37854.t1 Couldn't classify 217319, 217469 Sorry, prediction pasa_asmbl_34815.p1 fails validation. (TTC) CG 217319-217469 GT CGG (GTC) AG 217743-217914 GT ACG (CAT) AG 218230-218348 GT GGG (AAA) AG 218550-218664 GT AAG (GGA) AG 218831-218930 GT ACG (AGG) AG 219039-219158 GT AGG (GAT) AG 219252-219428 GT GGG (ACC) AG 219517-219627 GT AGG (GGT) AG 219766-219903 GT AGG (CGC) AG 220201-220266 GT AGG (CTG) AG 220416-220474 GT AAG (GAT) AG 220725-220907 GT AAG (GAA) AG 221193-221304 GT AGG (TTT) AG 221460-221552 GT AGG (GAC) AG 221901-222092 CT AAC -recovered pasa_asmbl_34815.p1, terminal, 221901, 222092 -recovered pasa_asmbl_34815.p1, internal, 217743, 217914 -recovered pasa_asmbl_34815.p1, internal, 218230, 218348 -recovered pasa_asmbl_34815.p1, internal, 218550, 218664 -recovered pasa_asmbl_34815.p1, internal, 218831, 218930 -recovered pasa_asmbl_34815.p1, internal, 219039, 219158 -recovered pasa_asmbl_34815.p1, internal, 219252, 219428 -recovered pasa_asmbl_34815.p1, internal, 219517, 219627 -recovered pasa_asmbl_34815.p1, internal, 219766, 219903 -recovered pasa_asmbl_34815.p1, internal, 220201, 220266 -recovered pasa_asmbl_34815.p1, internal, 220416, 220474 -recovered pasa_asmbl_34815.p1, internal, 220725, 220907 -recovered pasa_asmbl_34815.p1, internal, 221193, 221304 -recovered pasa_asmbl_34815.p1, internal, 221460, 221552 Valid prediction for GlimmerHMM_glimmerT_56845-T1 Valid prediction for Augustus_model.g37866.t1 Valid prediction for GeneMark_model.99276_t Valid prediction for CodingQuarry_transcript_40229-T1 Valid prediction for GlimmerHMM_glimmerT_56821-T1 Couldn't classify 214982, 215035 Couldn't classify 215543, 215589 Sorry, prediction pasa_asmbl_35156.p1 fails validation. (GAG) TT 214982-215035 GT AAG (GTT) AG 215127-215231 GT AGG (CCT) AG 215330-215426 GT AGG (GCG) AG 215543-215589 GG TGG -recovered pasa_asmbl_35156.p1, internal, 215127, 215231 -recovered pasa_asmbl_35156.p1, internal, 215330, 215426 Valid prediction for GeneMark_model.99226_t Valid prediction for GeneMark_model.99229_t Valid prediction for snap_scaffold_26-snap.954-T1 Valid prediction for snap_scaffold_26-snap.964-T1 Couldn't classify 34324, 34360 Couldn't classify 35241, 35352 Sorry, prediction pasa_asmbl_34828.p1 fails validation. (CGA) CC 34324-34360 GT CAG (TCT) AG 34483-34555 GT CTG (GTT) AG 34689-34796 GT AGG (GCT) AG 34896-34967 GT AGG (TCT) AG 35071-35160 GT AAG (CAC) AG 35241-35352 TT GCT -recovered pasa_asmbl_34828.p1, internal, 34483, 34555 -recovered pasa_asmbl_34828.p1, internal, 34689, 34796 -recovered pasa_asmbl_34828.p1, internal, 34896, 34967 -recovered pasa_asmbl_34828.p1, internal, 35071, 35160 Valid prediction for Augustus_model.g37841.t1 Valid prediction for GeneMark_model.99270_t Valid prediction for GlimmerHMM_glimmerT_56814-T1 Valid prediction for Augustus_model.g37839.t1 Valid prediction for GlimmerHMM_glimmerT_56847-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for Augustus_model.g37863.t1 Valid prediction for snap_scaffold_26-snap.950-T1 Valid prediction for GeneMark_model.99267_t Valid prediction for snap_scaffold_26-snap.986-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_56817-T1 Valid prediction for snap_scaffold_26-snap.980-T1 Valid prediction for GlimmerHMM_glimmerT_56831-T1 Valid prediction for GeneMark_model.99252_t Valid prediction for GeneMark_model.99220_t Couldn't classify 216056, 216130 Couldn't classify 216909, 217068 Sorry, prediction pasa_asmbl_34816.p1 fails validation. (CTC) AC 216056-216130 GT AGG (TGC) AG 216244-216364 GT GGG (GAA) AG 216612-216789 GT GGG (TCT) AG 216909-217068 GT CAG -recovered pasa_asmbl_34816.p1, internal, 216244, 216364 -recovered pasa_asmbl_34816.p1, internal, 216612, 216789 -recovered pasa_asmbl_34816.p1, internal, 216909, 217068 Valid prediction for snap_scaffold_26-snap.947-T1 Valid prediction for Augustus_model.g37865.t1 Valid prediction for GeneMark_model.99241_t Valid prediction for GeneMark_model.99272_t Valid prediction for snap_scaffold_26-snap.940-T1 Valid prediction for CodingQuarry_transcript_40220-T1 Valid prediction for snap_scaffold_26-snap.942-T1 Valid prediction for GeneMark_model.99265_t Valid prediction for GlimmerHMM_glimmerT_56816-T1 Valid prediction for snap_scaffold_26-snap.955-T1 Valid prediction for snap_scaffold_26-snap.977-T1 Valid prediction for GeneMark_model.99224_t Valid prediction for GlimmerHMM_glimmerT_56825-T1 Valid prediction for GeneMark_model.99234_t Valid prediction for pasa_asmbl_34817.p1 Valid prediction for GeneMark_model.99239_t Valid prediction for snap_scaffold_26-snap.981-T1 Valid prediction for HiQ_model.g37845.t1 Valid prediction for snap_scaffold_26-snap.972-T1 Valid prediction for GeneMark_model.99274_t Valid prediction for Augustus_model.g37847.t1 Valid prediction for Augustus_model.g37842.t1 Valid prediction for snap_scaffold_26-snap.983-T1 Valid prediction for GlimmerHMM_glimmerT_56822-T1 Valid prediction for GlimmerHMM_glimmerT_56823-T1 Valid prediction for GlimmerHMM_glimmerT_56832-T1 Valid prediction for GlimmerHMM_glimmerT_56843-T1 Valid prediction for snap_scaffold_26-snap.968-T1 Valid prediction for GeneMark_model.99256_t Valid prediction for snap_scaffold_26-snap.962-T1 Valid prediction for GeneMark_model.99259_t Valid prediction for GlimmerHMM_glimmerT_56813-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26452, rend_intergenic: 17667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39120, rend_intergenic: 34509 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43653, rend_intergenic: 42088 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59329, rend_intergenic: 52160 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81056, rend_intergenic: 72865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152977, rend_intergenic: 147580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172601, rend_intergenic: 165183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186290, rend_intergenic: 183247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196819, rend_intergenic: 189314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202015, rend_intergenic: 200757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214898, rend_intergenic: 202765 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219785, rend_intergenic: 215434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 225844 -exon list size: 1147 building trellis 0.1 0.2 0.3 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.3 39.4 39.5 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.7 88.8 88.9 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.6 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.7 99.8 99.9 -found 35 predictions from path traversal Error with prediction: snap lend_intergenic: 26452, rend_intergenic: 17667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39120, rend_intergenic: 34509 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43653, rend_intergenic: 42088 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59329, rend_intergenic: 52160 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 81056, rend_intergenic: 72865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152977, rend_intergenic: 147580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172601, rend_intergenic: 165183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186290, rend_intergenic: 183247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196819, rend_intergenic: 189314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202015, rend_intergenic: 200757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214898, rend_intergenic: 202765 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219785, rend_intergenic: 215434 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 32 predictions persist after filtering for low support