-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_4011566-4159479

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g37816.t1
Valid prediction for Augustus_model.g37805.t1
Valid prediction for snap_scaffold_26-snap.870-T1
Valid prediction for GeneMark_model.99147_t
Valid prediction for GlimmerHMM_glimmerT_56775-T1
Valid prediction for snap_scaffold_26-snap.889-T1
Valid prediction for GeneMark_model.99129_t
Valid prediction for GlimmerHMM_glimmerT_56769-T1
Valid prediction for Augustus_model.g37803.t1
Valid prediction for GeneMark_model.99149_t
Valid prediction for GeneMark_model.99136_t
Valid prediction for snap_scaffold_26-snap.902-T1
Valid prediction for GeneMark_model.99141_t
Valid prediction for pasa_asmbl_35402.p1
Valid prediction for GeneMark_model.99163_t
Valid prediction for snap_scaffold_26-snap.888-T1
Valid prediction for GlimmerHMM_glimmerT_56786-T1
Valid prediction for GeneMark_model.99134_t
Valid prediction for GeneMark_model.99169_t
Valid prediction for CodingQuarry_transcript_40214-T1
Valid prediction for GeneMark_model.99121_t
Valid prediction for snap_scaffold_26-snap.892-T1
Valid prediction for GlimmerHMM_glimmerT_56765-T1
Valid prediction for CodingQuarry_transcript_40215-T1
Valid prediction for Augustus_model.g37820.t1
Valid prediction for GlimmerHMM_glimmerT_56787-T1
Valid prediction for pasa_asmbl_35386.p1
Valid prediction for snap_scaffold_26-snap.878-T1
Valid prediction for GlimmerHMM_glimmerT_56778-T1
Valid prediction for CodingQuarry_transcript_40217-T1
Valid prediction for GeneMark_model.99138_t
Valid prediction for Augustus_model.g37811.t1
Valid prediction for GeneMark_model.99151_t
Couldn't classify 142551, 142601
Sorry, prediction pasa_asmbl_35404.p1 fails validation.
(ATG)	 AC	141635-141889	GT	GGG
(GTC)	 AG	142018-142197	GT	AGG
(AAT)	 AG	142551-142601	AA	CCA
-recovered pasa_asmbl_35404.p1, initial, 141635, 141889
-recovered pasa_asmbl_35404.p1, internal, 142018, 142197
Couldn't classify 119057, 119097
Sorry, prediction pasa_asmbl_35397.p1 fails validation.
(CTG)	 CC	119057-119097	GT	TGG
(CTT)	 AG	119986-120049	GT	AGG
(AGG)	 AG	120501-120713	AG	GAA
-recovered pasa_asmbl_35397.p1, terminal, 120501, 120713
-recovered pasa_asmbl_35397.p1, internal, 119986, 120049
Valid prediction for HiQ_model.g37814.t1
Couldn't classify 20897, 21011
Couldn't classify 25086, 25130
Sorry, prediction pasa_asmbl_35376.p1 fails validation.
(AGG)	 CC	20897-21011	GT	TGG
(GTA)	 AG	21383-21538	GT	CGG
(ATG)	 AG	21856-22239	GT	ACG
(CCA)	 AG	22395-22556	GT	CAG
(ATA)	 AG	23006-23134	GT	AGG
(CAC)	 AG	23555-23641	GT	AGG
(GCT)	 AG	23829-24068	GT	CGG
(GTC)	 AG	24506-24654	GT	AGG
(ATC)	 AG	24768-24944	GT	AGG
(GCG)	 AG	25086-25130	GA	TGG
add_exon() Sorry, pasa_asmbl_35376.p1 21856-22239-initial-1 is invalid.
-recovered pasa_asmbl_35376.p1, initial, 21856, 22239
-recovered pasa_asmbl_35376.p1, internal, 21383, 21538
-recovered pasa_asmbl_35376.p1, internal, 21856, 22239
-recovered pasa_asmbl_35376.p1, internal, 22395, 22556
-recovered pasa_asmbl_35376.p1, internal, 23006, 23134
-recovered pasa_asmbl_35376.p1, internal, 23555, 23641
-recovered pasa_asmbl_35376.p1, internal, 23829, 24068
-recovered pasa_asmbl_35376.p1, internal, 24506, 24654
-recovered pasa_asmbl_35376.p1, internal, 24768, 24944
Couldn't classify 90743, 90901
Sorry, prediction pasa_asmbl_35383.p1 fails validation.
(ATG)	 TG	89985-90115	GT	GTG
(ACG)	 AG	90241-90387	GT	AAG
(CTC)	 AG	90469-90598	GT	AGG
(CTG)	 AG	90743-90901	CA	CAC
-recovered pasa_asmbl_35383.p1, initial, 89985, 90115
-recovered pasa_asmbl_35383.p1, internal, 90241, 90387
-recovered pasa_asmbl_35383.p1, internal, 90469, 90598
Valid prediction for Augustus_model.g37815.t1
Couldn't classify 69480, 69581
Couldn't classify 73051, 73263
Sorry, prediction pasa_asmbl_35379.p1 fails validation.
(CCA)	 AG	69480-69581	GT	AGG
(ATC)	 AG	70402-70441	GT	GGG
(GGC)	 AG	70566-70831	GT	AAG
(CCT)	 AG	70936-71019	GT	AGG
(GTG)	 AG	72080-72191	GT	TGG
(TTC)	 AG	72639-72682	GT	AGG
(AGG)	 AG	72828-72950	GT	AGG
(GAG)	 AG	73051-73263	CC	CCC
-recovered pasa_asmbl_35379.p1, internal, 69480, 69581
-recovered pasa_asmbl_35379.p1, internal, 70402, 70441
-recovered pasa_asmbl_35379.p1, internal, 70566, 70831
-recovered pasa_asmbl_35379.p1, internal, 70936, 71019
-recovered pasa_asmbl_35379.p1, internal, 72080, 72191
-recovered pasa_asmbl_35379.p1, internal, 72639, 72682
-recovered pasa_asmbl_35379.p1, internal, 72828, 72950
Valid prediction for snap_scaffold_26-snap.866-T1
Valid prediction for GeneMark_model.99155_t
Valid prediction for HiQ_model.g37806.t1
Valid prediction for GeneMark_model.99146_t
Valid prediction for GeneMark_model.99132_t
Valid prediction for GlimmerHMM_glimmerT_56770-T1
Valid prediction for GeneMark_model.99158_t
Valid prediction for Augustus_model.g37807.t1
Valid prediction for GeneMark_model.99171_t
Valid prediction for GlimmerHMM_glimmerT_56777-T1
Valid prediction for GeneMark_model.99123_t
Valid prediction for GeneMark_model.99162_t
Valid prediction for GlimmerHMM_glimmerT_56782-T1
Valid prediction for GeneMark_model.99167_t
Valid prediction for snap_scaffold_26-snap.897-T1
Couldn't classify 91789, 91969
Couldn't classify 92203, 92390
Sorry, prediction pasa_asmbl_35384.p1 fails validation.
(GAG)	 AG	91789-91969	GT	AGG
(GGT)	 AG	92203-92390	GA	GAG
-recovered pasa_asmbl_35384.p1, internal, 91789, 91969
Couldn't classify 73789, 73959
Sorry, prediction pasa_asmbl_35381.p1 fails validation.
(CGC)	 CA	73789-73959	GT	CGG
(GAA)	 AG	74164-74234	GT	CTG
(GGC)	 AG	74613-74714	GT	AGG
(GCC)	 AG	74821-74882	GT	ACG
(TCG)	 AG	75014-75180	GT	AGG
(GTG)	 AG	75296-75529	AG	AAA
-recovered pasa_asmbl_35381.p1, terminal, 75296, 75529
-recovered pasa_asmbl_35381.p1, internal, 74164, 74234
-recovered pasa_asmbl_35381.p1, internal, 74613, 74714
-recovered pasa_asmbl_35381.p1, internal, 74821, 74882
-recovered pasa_asmbl_35381.p1, internal, 75014, 75180
Valid prediction for CodingQuarry_transcript_40208-T1
Valid prediction for pasa_asmbl_35391.p1
Valid prediction for CodingQuarry_transcript_40216-T1
Valid prediction for Augustus_model.g37804.t1
Valid prediction for GlimmerHMM_glimmerT_56774-T1
Couldn't classify 135375, 135674
Sorry, prediction pasa_asmbl_35403.p2 fails validation.
(ATG)	 GG	135171-135179	GT	AGG
(ACC)	 AG	135375-135674	CT	ACC
-recovered pasa_asmbl_35403.p2, initial, 135171, 135179
Valid prediction for HiQ_model.g37818.t1
Valid prediction for GeneMark_model.99119_t
Couldn't classify 8951, 9014
Couldn't classify 12731, 12799
Sorry, prediction pasa_asmbl_35375.p1 fails validation.
(TTC)	 AC	8951-9014	GT	AGG
(GTG)	 AG	10738-10799	GT	AGG
(AGA)	 AG	10936-10995	GT	TGG
(AAA)	 AG	11153-11267	GT	AGG
(GTC)	 AG	11444-11586	GT	AGG
(ATC)	 AG	12060-12185	GT	AGG
(ATC)	 AG	12731-12799	AA	TCA
-recovered pasa_asmbl_35375.p1, internal, 10738, 10799
-recovered pasa_asmbl_35375.p1, internal, 10936, 10995
-recovered pasa_asmbl_35375.p1, internal, 11153, 11267
-recovered pasa_asmbl_35375.p1, internal, 11444, 11586
-recovered pasa_asmbl_35375.p1, internal, 12060, 12185
Valid prediction for GlimmerHMM_glimmerT_56779-T1
Valid prediction for GeneMark_model.99114_t
Valid prediction for snap_scaffold_26-snap.876-T1
Valid prediction for GlimmerHMM_glimmerT_56767-T1
Couldn't classify 110377, 110498
Couldn't classify 112038, 112180
Sorry, prediction pasa_asmbl_35394.p1 fails validation.
(AAC)	 GG	110377-110498	GT	AGG
(GCA)	 AG	110616-110710	GT	TGG
(ATC)	 AG	110862-110907	GT	AGG
(CAG)	 AG	111312-111363	GT	CGG
(CTC)	 AG	111446-111518	GT	AGG
(TTT)	 AG	111653-111750	GC	AGG
(GGA)	 AG	111888-111999	GT	AGG
(ATA)	 AG	112038-112180	GT	AGG
-recovered pasa_asmbl_35394.p1, internal, 110616, 110710
-recovered pasa_asmbl_35394.p1, internal, 110862, 110907
-recovered pasa_asmbl_35394.p1, internal, 111312, 111363
-recovered pasa_asmbl_35394.p1, internal, 111446, 111518
-recovered pasa_asmbl_35394.p1, internal, 111653, 111750
-recovered pasa_asmbl_35394.p1, internal, 111888, 111999
-recovered pasa_asmbl_35394.p1, internal, 112038, 112180
Valid prediction for snap_scaffold_26-snap.864-T1
Valid prediction for GeneMark_model.99130_t
Valid prediction for snap_scaffold_26-snap.901-T1
Valid prediction for snap_scaffold_26-snap.885-T1
Valid prediction for GlimmerHMM_glimmerT_56768-T1
Valid prediction for Augustus_model.g37819.t1
Valid prediction for CodingQuarry_transcript_40209-T1
Couldn't classify 114483, 115001
Sorry, prediction pasa_asmbl_35395.p1 fails validation.
(CGG)	 GT	114483-115001	GG	AAG
Valid prediction for GeneMark_model.99113_t
Valid prediction for GlimmerHMM_glimmerT_56784-T1
Valid prediction for GeneMark_model.99160_t
Valid prediction for GeneMark_model.99140_t
Valid prediction for GeneMark_model.99125_t
Valid prediction for GlimmerHMM_glimmerT_56776-T1
Valid prediction for GeneMark_model.99117_t
Valid prediction for HiQ_model.g37813.t1
Valid prediction for snap_scaffold_26-snap.896-T1
Valid prediction for snap_scaffold_26-snap.898-T1
Valid prediction for GeneMark_model.99172_t
Valid prediction for CodingQuarry_transcript_40210-T1
Valid prediction for snap_scaffold_26-snap.890-T1
Valid prediction for GlimmerHMM_glimmerT_56766-T1
Valid prediction for snap_scaffold_26-snap.891-T1
Valid prediction for pasa_asmbl_35390.p1
Valid prediction for GeneMark_model.99144_t
Valid prediction for snap_scaffold_26-snap.899-T1
Valid prediction for snap_scaffold_26-snap.900-T1
Couldn't classify 69224, 69365
Sorry, prediction pasa_asmbl_35378.p3 fails validation.
(ATG)	 GC	67145-67198	GT	AGG
(GTG)	 AG	68794-68981	GT	AGG
(GAA)	 AG	69224-69365	AC	AGA
-recovered pasa_asmbl_35378.p3, initial, 67145, 67198
-recovered pasa_asmbl_35378.p3, internal, 68794, 68981
Valid prediction for CodingQuarry_transcript_40207-T1
Couldn't classify 87731, 87812
Couldn't classify 89784, 89811
Sorry, prediction pasa_asmbl_35382.p1 fails validation.
(CTT)	 GG	87731-87812	GT	AGG
(ACT)	 AG	88928-89028	GT	GAG
(TAC)	 AG	89125-89173	GT	AGG
(GGG)	 AG	89546-89651	GT	AGG
(CTC)	 AG	89784-89811	CA	GTC
-recovered pasa_asmbl_35382.p1, internal, 88928, 89028
-recovered pasa_asmbl_35382.p1, internal, 89125, 89173
-recovered pasa_asmbl_35382.p1, internal, 89546, 89651
Valid prediction for CodingQuarry_transcript_40213-T1
Valid prediction for GeneMark_model.99127_t
Valid prediction for GeneMark_model.99154_t
Valid prediction for GeneMark_model.99166_t
Valid prediction for GeneMark_model.99156_t
Valid prediction for HiQ_model.g37812.t1
Valid prediction for snap_scaffold_26-snap.880-T1
Valid prediction for GlimmerHMM_glimmerT_56781-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_26-snap.865-T1
Couldn't classify 21234, 21316
Sorry, prediction pasa_asmbl_34805.p1 fails validation.
(GAG)	 AA	21234-21316	GT	AGG
(CAT)	 AG	21452-21662	GT	GAG
(CTT)	 AG	21889-21945	GT	AGG
(ATG)	 AG	22524-22592	GT	AGG
(CAA)	 AG	22942-23115	GT	AGG
(GCC)	 AG	23364-23476	GT	GGG
(GCG)	 AG	23558-23624	GT	TGG
(GAG)	 AG	23732-23904	GT	AGG
(GGA)	 AG	24037-24118	GT	AGG
(GTC)	 AG	24238-24423	GT	AGG
(GTG)	 AG	24518-24661	GT	AGG
(GTT)	 AG	25027-25059	AG	AGA
-recovered pasa_asmbl_34805.p1, initial, 22524, 22592
-recovered pasa_asmbl_34805.p1, terminal, 25027, 25059
-recovered pasa_asmbl_34805.p1, internal, 21452, 21662
-recovered pasa_asmbl_34805.p1, internal, 21889, 21945
-recovered pasa_asmbl_34805.p1, internal, 22524, 22592
-recovered pasa_asmbl_34805.p1, internal, 22942, 23115
-recovered pasa_asmbl_34805.p1, internal, 23364, 23476
-recovered pasa_asmbl_34805.p1, internal, 23558, 23624
-recovered pasa_asmbl_34805.p1, internal, 23732, 23904
-recovered pasa_asmbl_34805.p1, internal, 24037, 24118
-recovered pasa_asmbl_34805.p1, internal, 24238, 24423
-recovered pasa_asmbl_34805.p1, internal, 24518, 24661
Valid prediction for GeneMark_model.99116_t
Valid prediction for GeneMark_model.99150_t
Valid prediction for snap_scaffold_26-snap.868-T1
Valid prediction for GeneMark_model.99118_t
Valid prediction for snap_scaffold_26-snap.881-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.99133_t
Valid prediction for snap_scaffold_26-snap.883-T1
Valid prediction for snap_scaffold_26-snap.874-T1
Valid prediction for GeneMark_model.99170_t
Valid prediction for GlimmerHMM_glimmerT_56771-T1
Valid prediction for snap_scaffold_26-snap.877-T1
Valid prediction for snap_scaffold_26-snap.879-T1
Valid prediction for GeneMark_model.99168_t
Valid prediction for GeneMark_model.99115_t
Couldn't classify 141979, 142020
Couldn't classify 143196, 143260
Sorry, prediction pasa_asmbl_35191.p1 fails validation.
(TGC)	 CC	141979-142020	GT	AGG
(GCT)	 AG	142495-142569	GT	AGG
(GTG)	 AG	142830-142974	GT	CGG
(ATG)	 AG	143196-143260	GA	GGG
-recovered pasa_asmbl_35191.p1, internal, 142495, 142569
-recovered pasa_asmbl_35191.p1, internal, 142830, 142974
Valid prediction for snap_scaffold_26-snap.887-T1
Valid prediction for GeneMark_model.99128_t
Valid prediction for snap_scaffold_26-snap.875-T1
Valid prediction for snap_scaffold_26-snap.886-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_56780-T1
Valid prediction for GeneMark_model.99153_t
Valid prediction for GeneMark_model.99137_t
Valid prediction for Augustus_model.g37802.t1
Valid prediction for Augustus_model.g37808.t1
Valid prediction for GlimmerHMM_glimmerT_56772-T1
Valid prediction for GeneMark_model.99122_t
Valid prediction for snap_scaffold_26-snap.872-T1
Valid prediction for GeneMark_model.99126_t
Valid prediction for snap_scaffold_26-snap.867-T1
Valid prediction for snap_scaffold_26-snap.884-T1
Valid prediction for GeneMark_model.99161_t
Valid prediction for GeneMark_model.99120_t
Valid prediction for GlimmerHMM_glimmerT_56783-T1
Valid prediction for CodingQuarry_transcript_40206-T1
Valid prediction for GeneMark_model.99112_t
Valid prediction for Augustus_model.g37810.t1
Valid prediction for GeneMark_model.99159_t
Valid prediction for GeneMark_model.99142_t
Valid prediction for GeneMark_model.99152_t
Valid prediction for GeneMark_model.99148_t
Valid prediction for HiQ_model.g37817.t1
Valid prediction for snap_scaffold_26-snap.873-T1
Valid prediction for snap_scaffold_26-snap.893-T1
Valid prediction for GeneMark_model.99164_t
Valid prediction for GlimmerHMM_glimmerT_56773-T1
Valid prediction for snap_scaffold_26-snap.895-T1
Valid prediction for GlimmerHMM_glimmerT_56785-T1
Valid prediction for snap_scaffold_26-snap.894-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g37809.t1
Valid prediction for GeneMark_model.99157_t
Valid prediction for snap_scaffold_26-snap.882-T1
Valid prediction for GeneMark_model.99143_t
Valid prediction for GeneMark_model.99124_t
Valid prediction for snap_scaffold_26-snap.869-T1
Valid prediction for GeneMark_model.99165_t
Valid prediction for GeneMark_model.99139_t
Valid prediction for GeneMark_model.99131_t
Valid prediction for GeneMark_model.99135_t
Valid prediction for GeneMark_model.99145_t
Valid prediction for snap_scaffold_26-snap.871-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5219, rend_intergenic: 2157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25549, rend_intergenic: 12451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33116, rend_intergenic: 28008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49550, rend_intergenic: 33175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53964, rend_intergenic: 49550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55594, rend_intergenic: 54082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63745, rend_intergenic: 55633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63909, rend_intergenic: 63776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75529, rend_intergenic: 69311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92729, rend_intergenic: 85479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120713, rend_intergenic: 115905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126789, rend_intergenic: 123072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 113330, rend_intergenic: 113327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 147914
-exon list size: 803


building trellis

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21.5    
21.6    
21.7    
21.9    
22.0    
22.1    
22.2    
22.4    
22.5    
22.6    
22.7    
22.9    
23.0    
23.1    
23.2    
23.4    
23.5    
23.6    
23.7    
23.9    
24.0    
24.1    
24.2    
24.3    
24.5    
24.6    
24.7    
24.8    
25.0    
25.1    
25.2    
25.3    
25.5    
25.6    
25.7    
25.8    
26.0    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.8    
27.0    
27.1    
27.2    
27.3    
27.5    
27.6    
27.7    
27.8    
28.0    
28.1    
28.2    
28.3    
28.4    
28.6    
28.7    
28.8    
28.9    
29.1    
29.2    
29.3    
29.4    
29.6    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.4    
30.6    
30.7    
30.8    
30.9    
31.1    
31.2    
31.3    
31.4    
31.6    
31.7    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.5    
32.7    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.5    
33.7    
33.8    
33.9    
34.0    
34.2    
34.3    
34.4    
34.5    
34.7    
34.8    
34.9    
35.0    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.1    
36.3    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.8    
37.9    
38.0    
38.1    
38.3    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.1    
40.2    
40.4    
40.5    
40.6    
40.7    
40.9    
41.0    
41.1    
41.2    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.3    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 5219, rend_intergenic: 2157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25549, rend_intergenic: 12451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33116, rend_intergenic: 28008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49550, rend_intergenic: 33175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53964, rend_intergenic: 49550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55594, rend_intergenic: 54082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63745, rend_intergenic: 55633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63909, rend_intergenic: 63776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75529, rend_intergenic: 69311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92729, rend_intergenic: 85479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120713, rend_intergenic: 115905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126789, rend_intergenic: 123072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 113330, rend_intergenic: 113327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support