-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_3432196-3681626 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.98985_t Valid prediction for snap_scaffold_26-snap.766-T1 Valid prediction for Augustus_model.g37744.t1 Valid prediction for GeneMark_model.99013_t Valid prediction for GeneMark_model.98991_t Valid prediction for GlimmerHMM_glimmerT_56705-T1 Valid prediction for snap_scaffold_26-snap.741-T1 Valid prediction for CodingQuarry_transcript_40190-T1 Valid prediction for snap_scaffold_26-snap.755-T1 Valid prediction for GlimmerHMM_glimmerT_56678-T1 Valid prediction for GeneMark_model.99025_t Valid prediction for snap_scaffold_26-snap.735-T1 Valid prediction for snap_scaffold_26-snap.732-T1 Valid prediction for Augustus_model.g37753.t1 Valid prediction for CodingQuarry_transcript_40183-T1 Valid prediction for snap_scaffold_26-snap.744-T1 Valid prediction for GeneMark_model.99015_t Valid prediction for snap_scaffold_26-snap.733-T1 Valid prediction for Augustus_model.g37735.t1 Valid prediction for snap_scaffold_26-snap.760-T1 Valid prediction for snap_scaffold_26-snap.758-T1 Valid prediction for snap_scaffold_26-snap.726-T1 Valid prediction for snap_scaffold_26-snap.752-T1 Valid prediction for GlimmerHMM_glimmerT_56696-T1 Valid prediction for GlimmerHMM_glimmerT_56690-T1 Valid prediction for snap_scaffold_26-snap.721-T1 Couldn't classify 86796, 87001 Sorry, prediction pasa_asmbl_35315.p1 fails validation. (AAC) AA 86796-87001 GT AAG (TGA) AG 87122-87266 GT AAG (TTG) AG 89307-89437 GT CAG (GTA) AG 90415-90508 GT TGG (GTC) AG 91659-91766 GT AGG (CTC) AG 91898-91939 GT AGG (GTA) AG 92162-92239 GT TGG (ACG) AG 92640-92774 CA AAC -recovered pasa_asmbl_35315.p1, terminal, 92640, 92774 -recovered pasa_asmbl_35315.p1, internal, 87122, 87266 -recovered pasa_asmbl_35315.p1, internal, 89307, 89437 -recovered pasa_asmbl_35315.p1, internal, 90415, 90508 -recovered pasa_asmbl_35315.p1, internal, 91659, 91766 -recovered pasa_asmbl_35315.p1, internal, 91898, 91939 -recovered pasa_asmbl_35315.p1, internal, 92162, 92239 Valid prediction for GeneMark_model.98981_t Couldn't classify 157052, 157189 Sorry, prediction pasa_asmbl_35331.p3 fails validation. (CAG) TC 157052-157189 GT AGG (TCT) AG 157506-157653 GT AGG (AGG) AG 158328-158422 CA AAC -recovered pasa_asmbl_35331.p3, terminal, 158328, 158422 -recovered pasa_asmbl_35331.p3, internal, 157506, 157653 Valid prediction for GlimmerHMM_glimmerT_56703-T1 Valid prediction for GeneMark_model.98977_t Valid prediction for GeneMark_model.99011_t Valid prediction for GeneMark_model.98967_t Couldn't classify 124496, 125215 Sorry, prediction pasa_asmbl_35320.p1 fails validation. (CCA) AT 124496-125215 GT GGG (GGT) AG 125353-125442 CG GAC -recovered pasa_asmbl_35320.p1, terminal, 125353, 125442 Valid prediction for GeneMark_model.98963_t Valid prediction for GeneMark_model.98969_t Valid prediction for GeneMark_model.99004_t Valid prediction for snap_scaffold_26-snap.742-T1 Valid prediction for GeneMark_model.99008_t Valid prediction for GlimmerHMM_glimmerT_56697-T1 Valid prediction for snap_scaffold_26-snap.719-T1 Sorry, intron length (3) is less than minimum required (10) Couldn't classify 110280, 110430 Sorry, prediction pasa_asmbl_35878.p1 fails validation. (GCA) TT 110280-110430 GT GGG (AGA) AG 110744-110852 GT AGG (TTG) AG 111113-111172 GT GGG (AGT) AG 111310-111403 GT ATG (GGG) AG 111669-111824 GT AGG (GGG) AG 111959-112089 GT AGG (ATA) AG 112227-112322 GT AGG (ACA) AG 112649-112741 GT ACG (CCA) AG 112860-112956 GT TGG (GAC) AG 113060-113152 GT AGG (CTA) AG 113272-113392 GT CAG (GTG) AG 113482-113579 GT AGG (TGG) AG 113753-113866 GT ACG (GCT) AG 114148-114274 GT AGG (ACA) AG 114368-114545 GT AGG (TCC) AG 114644-114830 GA AGG -recovered pasa_asmbl_35878.p1, terminal, 114644, 114830 -recovered pasa_asmbl_35878.p1, internal, 110744, 110852 -recovered pasa_asmbl_35878.p1, internal, 111113, 111172 -recovered pasa_asmbl_35878.p1, internal, 111310, 111403 -recovered pasa_asmbl_35878.p1, internal, 111669, 111824 -recovered pasa_asmbl_35878.p1, internal, 111959, 112089 -recovered pasa_asmbl_35878.p1, internal, 112227, 112322 -recovered pasa_asmbl_35878.p1, internal, 112649, 112741 -recovered pasa_asmbl_35878.p1, internal, 112860, 112956 -recovered pasa_asmbl_35878.p1, internal, 113060, 113152 -recovered pasa_asmbl_35878.p1, internal, 113272, 113392 -recovered pasa_asmbl_35878.p1, internal, 113482, 113579 -recovered pasa_asmbl_35878.p1, internal, 113753, 113866 -recovered pasa_asmbl_35878.p1, internal, 114148, 114274 -recovered pasa_asmbl_35878.p1, internal, 114368, 114545 Valid prediction for snap_scaffold_26-snap.747-T1 Valid prediction for GlimmerHMM_glimmerT_56689-T1 Valid prediction for GeneMark_model.98973_t Valid prediction for GeneMark_model.99005_t Valid prediction for GlimmerHMM_glimmerT_56693-T1 Valid prediction for Augustus_model.g37742.t1 Valid prediction for GeneMark_model.99027_t Valid prediction for GeneMark_model.99020_t Valid prediction for GlimmerHMM_glimmerT_56692-T1 Couldn't classify 226039, 226117 Sorry, prediction pasa_asmbl_35339.p1 fails validation. (ATG) AA 219904-219988 GT AGG (GGT) AG 222748-222854 GT GGG (GTG) AG 224959-225017 GT GAG (TCT) AG 226039-226117 GT AGG -recovered pasa_asmbl_35339.p1, initial, 219904, 219988 -recovered pasa_asmbl_35339.p1, terminal, 224959, 225017 -recovered pasa_asmbl_35339.p1, internal, 222748, 222854 -recovered pasa_asmbl_35339.p1, internal, 224959, 225017 -recovered pasa_asmbl_35339.p1, internal, 226039, 226117 Valid prediction for snap_scaffold_26-snap.770-T1 Valid prediction for GlimmerHMM_glimmerT_56708-T1 Valid prediction for pasa_asmbl_35328.p1 Valid prediction for snap_scaffold_26-snap.759-T1 Couldn't classify 184630, 184768 Couldn't classify 187887, 187937 Sorry, prediction pasa_asmbl_35332.p1 fails validation. (ACT) AG 184630-184768 GT TGG (GGA) AG 184974-185018 GT AGG (AGA) AG 185206-185355 GT TGG (AGA) AG 185860-185993 GT AGG (ATC) AG 186473-186578 GT GGG (GAC) AG 187494-187555 GT GGG (CTC) AG 187887-187937 GA GTG -recovered pasa_asmbl_35332.p1, internal, 184630, 184768 -recovered pasa_asmbl_35332.p1, internal, 184974, 185018 -recovered pasa_asmbl_35332.p1, internal, 185206, 185355 -recovered pasa_asmbl_35332.p1, internal, 185860, 185993 -recovered pasa_asmbl_35332.p1, internal, 186473, 186578 -recovered pasa_asmbl_35332.p1, internal, 187494, 187555 Valid prediction for GlimmerHMM_glimmerT_56706-T1 Valid prediction for GeneMark_model.99028_t Valid prediction for Augustus_model.g37746.t1 Valid prediction for Augustus_model.g37737.t1 Couldn't classify 103063, 103154 Couldn't classify 103847, 103931 Couldn't classify 104164, 104256 Couldn't classify 105932, 106016 Sorry, prediction pasa_asmbl_35317.p1 fails validation. (GAC) AG 103063-103154 GT TGG (TGG) AG 103349-103430 GT AGG (GAC) AG 103657-103732 GT AGG (ACA) AG 103847-103931 AT AGA (GTA) AC 104164-104256 GT TGG (TGT) AG 104382-104567 GT AGG (ACC) AG 105932-106016 GT AGG -recovered pasa_asmbl_35317.p1, internal, 103063, 103154 -recovered pasa_asmbl_35317.p1, internal, 103349, 103430 -recovered pasa_asmbl_35317.p1, internal, 103657, 103732 -recovered pasa_asmbl_35317.p1, internal, 104382, 104567 -recovered pasa_asmbl_35317.p1, internal, 105932, 106016 Valid prediction for GeneMark_model.98957_t Valid prediction for GeneMark_model.98993_t Valid prediction for GlimmerHMM_glimmerT_56677-T1 Valid prediction for HiQ_model.g37761.t1 Valid prediction for GeneMark_model.98987_t Valid prediction for Augustus_model.g37734.t1 Valid prediction for GlimmerHMM_glimmerT_56674-T1 Valid prediction for CodingQuarry_transcript_40185-T1 Valid prediction for GeneMark_model.98997_t Valid prediction for GlimmerHMM_glimmerT_56699-T1 Valid prediction for Augustus_model.g37749.t1 Valid prediction for GeneMark_model.98995_t Valid prediction for snap_scaffold_26-snap.754-T1 Valid prediction for pasa_asmbl_35322.p1 Valid prediction for snap_scaffold_26-snap.736-T1 Valid prediction for CodingQuarry_transcript_40186-T1 Valid prediction for GlimmerHMM_glimmerT_56694-T1 Valid prediction for GeneMark_model.98982_t Valid prediction for GlimmerHMM_glimmerT_56688-T1 Valid prediction for Augustus_model.g37751.t1 Valid prediction for GlimmerHMM_glimmerT_56701-T1 Valid prediction for GeneMark_model.99000_t Valid prediction for GeneMark_model.99012_t Valid prediction for CodingQuarry_transcript_40192-T1 Valid prediction for snap_scaffold_26-snap.772-T1 Valid prediction for GeneMark_model.99022_t Valid prediction for GeneMark_model.98996_t Valid prediction for Augustus_model.g37758.t1 Valid prediction for GeneMark_model.98998_t Valid prediction for GeneMark_model.98971_t Couldn't classify 211284, 211460 Couldn't classify 212822, 212996 Sorry, prediction pasa_asmbl_35338.p1 fails validation. (AGT) AA 211284-211460 GT AGG (AAA) AG 211762-211958 GT AGG (CTC) AG 212143-212260 GT AGG (ATT) AG 212573-212649 GT ATG (GTC) AG 212822-212996 GA GTG -recovered pasa_asmbl_35338.p1, internal, 211762, 211958 -recovered pasa_asmbl_35338.p1, internal, 212143, 212260 -recovered pasa_asmbl_35338.p1, internal, 212573, 212649 Valid prediction for Augustus_model.g37756.t1 Valid prediction for Augustus_model.g37757.t1 Valid prediction for GeneMark_model.98961_t Valid prediction for CodingQuarry_transcript_40191-T1 Valid prediction for GlimmerHMM_glimmerT_56679-T1 Valid prediction for snap_scaffold_26-snap.731-T1 Valid prediction for snap_scaffold_26-snap.774-T1 Valid prediction for HiQ_model.g37748.t1 Valid prediction for GlimmerHMM_glimmerT_56711-T1 Valid prediction for Augustus_model.g37743.t1 Valid prediction for snap_scaffold_26-snap.728-T1 Valid prediction for snap_scaffold_26-snap.724-T1 Valid prediction for GeneMark_model.98989_t Valid prediction for GlimmerHMM_glimmerT_56675-T1 Couldn't classify 210161, 210265 Sorry, prediction pasa_asmbl_35337.p1 fails validation. (ATG) CG 208311-208361 GT CGG (AGA) AG 209085-209163 GT AGG (ATG) AG 209495-209664 GT AGG (TAC) AG 210161-210265 GG CAG -recovered pasa_asmbl_35337.p1, initial, 208311, 208361 add_exon() Sorry, pasa_asmbl_35337.p1 209495-209664-initial-1 is invalid. -recovered pasa_asmbl_35337.p1, initial, 209495, 209664 -recovered pasa_asmbl_35337.p1, internal, 209085, 209163 -recovered pasa_asmbl_35337.p1, internal, 209495, 209664 Valid prediction for CodingQuarry_transcript_40184-T1 Valid prediction for GlimmerHMM_glimmerT_56676-T1 Valid prediction for CodingQuarry_transcript_40187-T1 Valid prediction for GlimmerHMM_glimmerT_56710-T1 Valid prediction for snap_scaffold_26-snap.739-T1 Valid prediction for GeneMark_model.98983_t Valid prediction for snap_scaffold_26-snap.765-T1 Valid prediction for GeneMark_model.98964_t Valid prediction for GlimmerHMM_glimmerT_56704-T1 Valid prediction for CodingQuarry_transcript_40188-T1 Valid prediction for GeneMark_model.99018_t Couldn't classify 119909, 119987 Couldn't classify 120661, 120754 Sorry, prediction pasa_asmbl_35855.p1 fails validation. (TGG) CC 119909-119987 GT GAG (TGT) AG 120212-120318 GT AGG (CTG) AG 120459-120553 GT AGG (GTA) AG 120661-120754 GG AAG -recovered pasa_asmbl_35855.p1, internal, 120212, 120318 -recovered pasa_asmbl_35855.p1, internal, 120459, 120553 Valid prediction for GeneMark_model.98980_t Valid prediction for GeneMark_model.99009_t Valid prediction for GlimmerHMM_glimmerT_56712-T1 Valid prediction for snap_scaffold_26-snap.727-T1 Valid prediction for Augustus_model.g37760.t1 Valid prediction for GlimmerHMM_glimmerT_56673-T1 Valid prediction for GeneMark_model.98992_t Valid prediction for GeneMark_model.98979_t Valid prediction for Augustus_model.g37736.t1 Valid prediction for GeneMark_model.99016_t Valid prediction for GeneMark_model.99002_t Couldn't classify 237485, 237716 Sorry, prediction pasa_asmbl_35344.p1 fails validation. (CCT) TC 237485-237716 GT CAG (AGG) AG 237954-238059 GT AGG (AAA) AG 238145-238328 GT AGG (GTC) AG 238660-238740 GT GGG (GTG) AG 239263-239368 GT TGG (ACA) AG 239529-239670 GT GAG (GGC) AG 239784-239883 GT GGG (CTT) AG 240154-240183 GT AGG (GTG) AG 240934-241004 GT GGG (AAG) AG 241106-241169 CC AAC -recovered pasa_asmbl_35344.p1, terminal, 241106, 241169 -recovered pasa_asmbl_35344.p1, internal, 237954, 238059 -recovered pasa_asmbl_35344.p1, internal, 238145, 238328 -recovered pasa_asmbl_35344.p1, internal, 238660, 238740 -recovered pasa_asmbl_35344.p1, internal, 239263, 239368 -recovered pasa_asmbl_35344.p1, internal, 239529, 239670 -recovered pasa_asmbl_35344.p1, internal, 239784, 239883 -recovered pasa_asmbl_35344.p1, internal, 240154, 240183 -recovered pasa_asmbl_35344.p1, internal, 240934, 241004 Valid prediction for Augustus_model.g37755.t1 Valid prediction for snap_scaffold_26-snap.763-T1 Valid prediction for GeneMark_model.98966_t Valid prediction for snap_scaffold_26-snap.743-T1 Valid prediction for GeneMark_model.98974_t Valid prediction for snap_scaffold_26-snap.750-T1 Valid prediction for Augustus_model.g37745.t1 Valid prediction for GeneMark_model.99007_t Valid prediction for GlimmerHMM_glimmerT_56695-T1 Valid prediction for snap_scaffold_26-snap.738-T1 Valid prediction for snap_scaffold_26-snap.723-T1 Valid prediction for GlimmerHMM_glimmerT_56687-T1 Valid prediction for HiQ_model.g37747.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_56707-T1 Couldn't classify 94768, 94945 Sorry, prediction pasa_asmbl_35115.p1 fails validation. (CAC) CA 94768-94945 GT AGG (GTG) AG 95360-95447 GT AGG (TGA) AG 95614-95764 GT AGG (GTG) AG 96201-96377 GT AGG (CCT) AG 96507-96653 TG GAT -recovered pasa_asmbl_35115.p1, terminal, 96507, 96653 -recovered pasa_asmbl_35115.p1, internal, 95360, 95447 -recovered pasa_asmbl_35115.p1, internal, 95614, 95764 -recovered pasa_asmbl_35115.p1, internal, 96201, 96377 Valid prediction for GlimmerHMM_glimmerT_56686-T1 Valid prediction for GlimmerHMM_glimmerT_56682-T1 Valid prediction for GeneMark_model.98972_t Valid prediction for snap_scaffold_26-snap.773-T1 Valid prediction for GeneMark_model.98958_t Valid prediction for snap_scaffold_26-snap.720-T1 Valid prediction for CodingQuarry_transcript_40182-T1 Valid prediction for CodingQuarry_transcript_40189-T1 Valid prediction for snap_scaffold_26-snap.762-T1 Valid prediction for GlimmerHMM_glimmerT_56709-T1 Valid prediction for GeneMark_model.99017_t Valid prediction for GeneMark_model.98956_t Valid prediction for GlimmerHMM_glimmerT_56681-T1 Valid prediction for GeneMark_model.98990_t Valid prediction for GeneMark_model.99003_t Valid prediction for GeneMark_model.99001_t Valid prediction for GlimmerHMM_glimmerT_56700-T1 Valid prediction for pasa_asmbl_34768.p1 Valid prediction for pasa_asmbl_34769.p1 Valid prediction for snap_scaffold_26-snap.737-T1 Valid prediction for GeneMark_model.99023_t Valid prediction for GeneMark_model.98994_t Valid prediction for GlimmerHMM_glimmerT_56691-T1 Valid prediction for snap_scaffold_26-snap.757-T1 Valid prediction for snap_scaffold_26-snap.734-T1 Valid prediction for Augustus_model.g37741.t1 Valid prediction for snap_scaffold_26-snap.730-T1 Valid prediction for GeneMark_model.98988_t Valid prediction for GeneMark_model.98968_t Valid prediction for GeneMark_model.99024_t Valid prediction for snap_scaffold_26-snap.748-T1 Valid prediction for snap_scaffold_26-snap.749-T1 Valid prediction for GeneMark_model.98970_t Valid prediction for GeneMark_model.98975_t Valid prediction for CodingQuarry_transcript_40193-T1 Valid prediction for GlimmerHMM_glimmerT_56698-T1 Valid prediction for GeneMark_model.98984_t Valid prediction for GeneMark_model.98962_t Valid prediction for snap_scaffold_26-snap.753-T1 Valid prediction for GlimmerHMM_glimmerT_56683-T1 Valid prediction for snap_scaffold_26-snap.725-T1 Valid prediction for snap_scaffold_26-snap.718-T1 Valid prediction for snap_scaffold_26-snap.767-T1 Valid prediction for GeneMark_model.99026_t Valid prediction for snap_scaffold_26-snap.751-T1 Valid prediction for HiQ_model.g37752.t1 Valid prediction for Augustus_model.g37754.t1 Valid prediction for snap_scaffold_26-snap.722-T1 Valid prediction for GeneMark_model.98960_t Valid prediction for GlimmerHMM_glimmerT_56680-T1 Valid prediction for snap_scaffold_26-snap.768-T1 Valid prediction for GeneMark_model.99010_t Valid prediction for snap_scaffold_26-snap.771-T1 Valid prediction for Augustus_model.g37738.t1 Valid prediction for HiQ_model.g37750.t1 Valid prediction for GlimmerHMM_glimmerT_56684-T1 Valid prediction for snap_scaffold_26-snap.729-T1 Valid prediction for GlimmerHMM_glimmerT_56685-T1 Valid prediction for GeneMark_model.98978_t Valid prediction for GlimmerHMM_glimmerT_56702-T1 Valid prediction for GeneMark_model.99021_t Valid prediction for GeneMark_model.98976_t Valid prediction for GeneMark_model.99014_t Valid prediction for GeneMark_model.98986_t Valid prediction for GeneMark_model.98999_t Valid prediction for GeneMark_model.99019_t Valid prediction for snap_scaffold_26-snap.769-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.99006_t Valid prediction for HiQ_model.g37739.t1 Valid prediction for snap_scaffold_26-snap.761-T1 Valid prediction for HiQ_model.g37759.t1 Valid prediction for Augustus_model.g37740.t1 Valid prediction for snap_scaffold_26-snap.756-T1 Valid prediction for GeneMark_model.98965_t Valid prediction for snap_scaffold_26-snap.746-T1 Valid prediction for snap_scaffold_26-snap.740-T1 Valid prediction for snap_scaffold_26-snap.745-T1 Valid prediction for pasa_asmbl_34774.p1 Valid prediction for snap_scaffold_26-snap.764-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 189303, rend_intergenic: 189300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20260, rend_intergenic: 7101 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24297, rend_intergenic: 21265 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54715, rend_intergenic: 37090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61626, rend_intergenic: 60187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84918, rend_intergenic: 63467 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89595, rend_intergenic: 87542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97095, rend_intergenic: 89939 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108521, rend_intergenic: 99309 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122696, rend_intergenic: 116502 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143770, rend_intergenic: 132755 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152009, rend_intergenic: 148533 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158422, rend_intergenic: 157466 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163292, rend_intergenic: 161878 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169238, rend_intergenic: 163810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172940, rend_intergenic: 170592 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184721, rend_intergenic: 176858 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188119, rend_intergenic: 184816 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201997, rend_intergenic: 192572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204225, rend_intergenic: 202052 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215766, rend_intergenic: 211360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224620, rend_intergenic: 221398 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229539, rend_intergenic: 224999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234444, rend_intergenic: 233608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238294, rend_intergenic: 234444 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 249431 -exon list size: 1143 building trellis 0.1 0.2 0.3 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.7 99.8 99.9 -found 39 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 189303, rend_intergenic: 189300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20260, rend_intergenic: 7101 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24297, rend_intergenic: 21265 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54715, rend_intergenic: 37090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61626, rend_intergenic: 60187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84918, rend_intergenic: 63467 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89595, rend_intergenic: 87542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97095, rend_intergenic: 89939 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108521, rend_intergenic: 99309 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122696, rend_intergenic: 116502 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143770, rend_intergenic: 132755 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152009, rend_intergenic: 148533 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158422, rend_intergenic: 157466 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163292, rend_intergenic: 161878 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169238, rend_intergenic: 163810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172940, rend_intergenic: 170592 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184721, rend_intergenic: 176858 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188119, rend_intergenic: 184816 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201997, rend_intergenic: 192572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204225, rend_intergenic: 202052 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215766, rend_intergenic: 211360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224620, rend_intergenic: 221398 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229539, rend_intergenic: 224999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234444, rend_intergenic: 233608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238294, rend_intergenic: 234444 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 29 predictions persist after filtering for low support