-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_26/scaffold_26_158309-396417

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_56273-T1
Valid prediction for GlimmerHMM_glimmerT_56298-T1
Valid prediction for GeneMark_model.97956_t
Valid prediction for GeneMark_model.97908_t
Valid prediction for GlimmerHMM_glimmerT_56290-T1
Valid prediction for GeneMark_model.97934_t
Valid prediction for snap_scaffold_26-snap.51-T1
Valid prediction for GlimmerHMM_glimmerT_56278-T1
Valid prediction for GlimmerHMM_glimmerT_56296-T1
Valid prediction for Augustus_model.g37527.t1
Valid prediction for GlimmerHMM_glimmerT_56289-T1
Valid prediction for GlimmerHMM_glimmerT_56283-T1
Valid prediction for GeneMark_model.97938_t
Valid prediction for snap_scaffold_26-snap.65-T1
Valid prediction for snap_scaffold_26-snap.63-T1
Valid prediction for GeneMark_model.97914_t
Valid prediction for GeneMark_model.97939_t
Valid prediction for GlimmerHMM_glimmerT_56275-T1
Valid prediction for snap_scaffold_26-snap.74-T1
Valid prediction for snap_scaffold_26-snap.66-T1
Valid prediction for snap_scaffold_26-snap.55-T1
Valid prediction for pasa_asmbl_35861.p1
Valid prediction for GeneMark_model.97927_t
Valid prediction for GeneMark_model.97960_t
Valid prediction for snap_scaffold_26-snap.68-T1
Valid prediction for GeneMark_model.97916_t
Valid prediction for snap_scaffold_26-snap.62-T1
Valid prediction for GlimmerHMM_glimmerT_56300-T1
Valid prediction for GeneMark_model.97941_t
Valid prediction for GeneMark_model.97937_t
Valid prediction for Augustus_model.g37531.t1
Valid prediction for GeneMark_model.97943_t
Valid prediction for GeneMark_model.97963_t
Valid prediction for GeneMark_model.97932_t
Valid prediction for GlimmerHMM_glimmerT_56295-T1
Valid prediction for GeneMark_model.97954_t
Valid prediction for snap_scaffold_26-snap.57-T1
Valid prediction for snap_scaffold_26-snap.47-T1
Couldn't classify 227399, 228223
Sorry, prediction pasa_asmbl_35203.p1 fails validation.
(ATG)	 AA	227399-228223	GA	AAG
Valid prediction for snap_scaffold_26-snap.52-T1
Valid prediction for GeneMark_model.97912_t
Valid prediction for snap_scaffold_26-snap.78-T1
Valid prediction for GlimmerHMM_glimmerT_56281-T1
Valid prediction for GeneMark_model.97961_t
Valid prediction for GeneMark_model.97953_t
Valid prediction for GlimmerHMM_glimmerT_56293-T1
Valid prediction for GeneMark_model.97936_t
Couldn't classify 226235, 226309
Couldn't classify 226421, 226984
Sorry, prediction pasa_asmbl_35202.p1 fails validation.
(CCT)	 GT	226235-226309	GT	AGG
(GAA)	 AG	226421-226984	GA	ACG
Valid prediction for snap_scaffold_26-snap.72-T1
Valid prediction for GeneMark_model.97925_t
Valid prediction for GeneMark_model.97933_t
Valid prediction for Augustus_model.g37518.t1
Valid prediction for Augustus_model.g37530.t1
Valid prediction for GeneMark_model.97926_t
Valid prediction for GlimmerHMM_glimmerT_56294-T1
Valid prediction for GeneMark_model.97947_t
Valid prediction for snap_scaffold_26-snap.75-T1
Valid prediction for GeneMark_model.97923_t
Valid prediction for snap_scaffold_26-snap.41-T1
Valid prediction for Augustus_model.g37534.t1
Valid prediction for snap_scaffold_26-snap.48-T1
Valid prediction for GeneMark_model.97928_t
Valid prediction for Augustus_model.g37528.t1
Valid prediction for GeneMark_model.97913_t
Valid prediction for GeneMark_model.97950_t
Valid prediction for Augustus_model.g37533.t1
Valid prediction for snap_scaffold_26-snap.44-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_26-snap.83-T1
Valid prediction for GeneMark_model.97922_t
Valid prediction for GlimmerHMM_glimmerT_56277-T1
Valid prediction for GeneMark_model.97958_t
Valid prediction for GlimmerHMM_glimmerT_56299-T1
Valid prediction for GeneMark_model.97918_t
Valid prediction for snap_scaffold_26-snap.70-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g37524.t1
Valid prediction for snap_scaffold_26-snap.59-T1
Valid prediction for snap_scaffold_26-snap.64-T1
Valid prediction for snap_scaffold_26-snap.50-T1
Valid prediction for GeneMark_model.97959_t
Valid prediction for GeneMark_model.97945_t
Valid prediction for Augustus_model.g37520.t1
Valid prediction for snap_scaffold_26-snap.80-T1
Valid prediction for snap_scaffold_26-snap.61-T1
Valid prediction for snap_scaffold_26-snap.58-T1
Valid prediction for snap_scaffold_26-snap.81-T1
Valid prediction for snap_scaffold_26-snap.73-T1
Valid prediction for snap_scaffold_26-snap.43-T1
Valid prediction for snap_scaffold_26-snap.79-T1
Valid prediction for Augustus_model.g37529.t1
Valid prediction for snap_scaffold_26-snap.46-T1
Valid prediction for GeneMark_model.97940_t
Valid prediction for GeneMark_model.97915_t
Valid prediction for GlimmerHMM_glimmerT_56284-T1
Valid prediction for snap_scaffold_26-snap.69-T1
Valid prediction for Augustus_model.g37519.t1
Valid prediction for GlimmerHMM_glimmerT_56292-T1
Valid prediction for GeneMark_model.97907_t
Valid prediction for Augustus_model.g37526.t1
Valid prediction for GeneMark_model.97924_t
Valid prediction for GlimmerHMM_glimmerT_56285-T1
Valid prediction for snap_scaffold_26-snap.42-T1
Valid prediction for GeneMark_model.97921_t
Valid prediction for GeneMark_model.97935_t
Valid prediction for snap_scaffold_26-snap.67-T1
Valid prediction for Augustus_model.g37525.t1
Valid prediction for GeneMark_model.97929_t
Valid prediction for GeneMark_model.97911_t
Valid prediction for GeneMark_model.97955_t
Valid prediction for snap_scaffold_26-snap.82-T1
Valid prediction for GlimmerHMM_glimmerT_56276-T1
Valid prediction for snap_scaffold_26-snap.84-T1
Valid prediction for snap_scaffold_26-snap.53-T1
Valid prediction for GeneMark_model.97917_t
Valid prediction for GlimmerHMM_glimmerT_56291-T1
Valid prediction for snap_scaffold_26-snap.49-T1
Valid prediction for GlimmerHMM_glimmerT_56287-T1
Valid prediction for GeneMark_model.97951_t
Valid prediction for GlimmerHMM_glimmerT_56272-T1
Valid prediction for Augustus_model.g37532.t1
Valid prediction for GeneMark_model.97910_t
Couldn't classify 186017, 186188
Sorry, prediction pasa_asmbl_34655.p1 fails validation.
(ATG)	 AG	182919-183013	GT	AGG
(GGA)	 AG	183606-183715	GT	AGG
(CTG)	 AG	184674-184737	GT	GGG
(AGC)	 AG	184986-185136	GT	AGG
(GTG)	 AG	185227-185335	GT	GGG
(TGT)	 AG	185484-185703	GT	AGG
(GGC)	 AG	186017-186188	GT	TGG
-recovered pasa_asmbl_34655.p1, initial, 182919, 183013
-recovered pasa_asmbl_34655.p1, internal, 182919, 183013
-recovered pasa_asmbl_34655.p1, internal, 183606, 183715
-recovered pasa_asmbl_34655.p1, internal, 184674, 184737
-recovered pasa_asmbl_34655.p1, internal, 184986, 185136
-recovered pasa_asmbl_34655.p1, internal, 185227, 185335
-recovered pasa_asmbl_34655.p1, internal, 185484, 185703
-recovered pasa_asmbl_34655.p1, internal, 186017, 186188
Valid prediction for Augustus_model.g37521.t1
Valid prediction for GlimmerHMM_glimmerT_56286-T1
Valid prediction for GlimmerHMM_glimmerT_56279-T1
Couldn't classify 218112, 218168
Couldn't classify 220335, 220418
Sorry, prediction pasa_asmbl_34653.p1 fails validation.
(GTG)	 AG	218112-218168	GT	TGG
(GTG)	 AG	219421-219531	GT	TGG
(AGC)	 AG	219765-219884	GT	AGG
(AAG)	 AG	220092-220199	GT	TGG
(GAT)	 AG	220335-220418	CT	TAC
-recovered pasa_asmbl_34653.p1, internal, 218112, 218168
-recovered pasa_asmbl_34653.p1, internal, 219421, 219531
-recovered pasa_asmbl_34653.p1, internal, 219765, 219884
-recovered pasa_asmbl_34653.p1, internal, 220092, 220199
Valid prediction for snap_scaffold_26-snap.76-T1
Valid prediction for GlimmerHMM_glimmerT_56282-T1
Valid prediction for GeneMark_model.97957_t
Valid prediction for GeneMark_model.97946_t
Valid prediction for snap_scaffold_26-snap.60-T1
Valid prediction for GeneMark_model.97942_t
Valid prediction for GeneMark_model.97919_t
Valid prediction for snap_scaffold_26-snap.54-T1
Valid prediction for GeneMark_model.97909_t
Valid prediction for Augustus_model.g37522.t1
Couldn't classify 174453, 174556
Sorry, prediction pasa_asmbl_34657.p1 fails validation.
(ATG)	 AG	171925-172040	GT	TTG
(TGA)	 AG	172667-172769	GT	TAG
(ACA)	 AG	173708-174245	GT	AGG
(AGT)	 AG	174453-174556	GT	AGG
-recovered pasa_asmbl_34657.p1, initial, 171925, 172040
-recovered pasa_asmbl_34657.p1, internal, 171925, 172040
-recovered pasa_asmbl_34657.p1, internal, 172667, 172769
-recovered pasa_asmbl_34657.p1, internal, 173708, 174245
-recovered pasa_asmbl_34657.p1, internal, 174453, 174556
Valid prediction for snap_scaffold_26-snap.40-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 223817, 223843
Sorry, prediction pasa_asmbl_34652.p1 fails validation.
(GTG)	 GT	223817-223843	GT	AGG
(GTG)	 AG	225330-225632	GG	GAG
-recovered pasa_asmbl_34652.p1, terminal, 225330, 225632
Valid prediction for snap_scaffold_26-snap.71-T1
Valid prediction for GlimmerHMM_glimmerT_56288-T1
Valid prediction for snap_scaffold_26-snap.56-T1
Valid prediction for GlimmerHMM_glimmerT_56280-T1
Valid prediction for GlimmerHMM_glimmerT_56297-T1
Valid prediction for Augustus_model.g37523.t1
Valid prediction for snap_scaffold_26-snap.77-T1
Valid prediction for GlimmerHMM_glimmerT_56274-T1
Valid prediction for GeneMark_model.97920_t
Valid prediction for snap_scaffold_26-snap.45-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7365, rend_intergenic: 3016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10164, rend_intergenic: 7405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24444, rend_intergenic: 14959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45762, rend_intergenic: 43782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53159, rend_intergenic: 48699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84529, rend_intergenic: 53246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90078, rend_intergenic: 84691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93806, rend_intergenic: 91796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104587, rend_intergenic: 99702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118485, rend_intergenic: 110870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135988, rend_intergenic: 132584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142160, rend_intergenic: 138164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147549, rend_intergenic: 142162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152318, rend_intergenic: 152204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157868, rend_intergenic: 152952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166779, rend_intergenic: 159985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179835, rend_intergenic: 177336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187061, rend_intergenic: 184994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210498, rend_intergenic: 192350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231337, rend_intergenic: 225889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238109
-exon list size: 816


building trellis

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67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.0    
76.2    
76.3    
76.4    
76.5    
76.7    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.2    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 44 predictions from path traversal
Error with prediction: snap lend_intergenic: 7365, rend_intergenic: 3016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10164, rend_intergenic: 7405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24444, rend_intergenic: 14959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45762, rend_intergenic: 43782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53159, rend_intergenic: 48699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84529, rend_intergenic: 53246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90078, rend_intergenic: 84691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93806, rend_intergenic: 91796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104587, rend_intergenic: 99702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118485, rend_intergenic: 110870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135988, rend_intergenic: 132584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142160, rend_intergenic: 138164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147549, rend_intergenic: 142162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152318, rend_intergenic: 152204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157868, rend_intergenic: 152952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166779, rend_intergenic: 159985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179835, rend_intergenic: 177336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187061, rend_intergenic: 184994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210498, rend_intergenic: 192350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231337, rend_intergenic: 225889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support