-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2594

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63158-T1
Couldn't classify 536, 637
Couldn't classify 1154, 1159
Sorry, prediction GeneMark_model.110450_t fails validation.
(GGC)	 AG	536-637	GT	CTG
(GCA)	 AG	714-854	GT	AAG
(AGG)	 AG	935-943	GT	CTG
(AAG)	 AG	1042-1047	GT	GAG
(AGA)	 AG	1090-1101	GT	GAG
(AGT)	 AG	1154-1159	GT	GAG
-recovered GeneMark_model.110450_t, internal, 536, 637
-recovered GeneMark_model.110450_t, internal, 714, 854
-recovered GeneMark_model.110450_t, internal, 935, 943
-recovered GeneMark_model.110450_t, internal, 1042, 1047
-recovered GeneMark_model.110450_t, internal, 1090, 1101
-recovered GeneMark_model.110450_t, internal, 1154, 1159

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1184
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support