-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2593

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2593-snap.1-T1
Couldn't classify 244, 525
Sorry, prediction GeneMark_model.110449_t fails validation.
(GAG)	 AG	244-525	GT	AGG
(GAG)	 AG	550-564	GT	AGG
(CAC)	 AG	603-614	GT	GAG
(AGG)	 AG	824-838	GT	GGG
(GAG)	 AG	875-1078	GT	GAG
(AAA)	 AG	1104-1125	AT	AGA
-recovered GeneMark_model.110449_t, terminal, 1104, 1125
-recovered GeneMark_model.110449_t, internal, 244, 525
-recovered GeneMark_model.110449_t, internal, 550, 564
-recovered GeneMark_model.110449_t, internal, 603, 614
-recovered GeneMark_model.110449_t, internal, 824, 838
-recovered GeneMark_model.110449_t, internal, 875, 1078

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1184
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support