-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2592

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1087, 1127
Sorry, prediction Augustus_model.g42125.t1 fails validation.
(ATG)	 AG	475-502	GT	AGG
(CAC)	 AG	1087-1127	GT	AGG
-recovered Augustus_model.g42125.t1, initial, 475, 502
-recovered Augustus_model.g42125.t1, internal, 475, 502
-recovered Augustus_model.g42125.t1, internal, 1087, 1127
Couldn't classify 12, 21
Couldn't classify 1087, 1127
Sorry, prediction GeneMark_model.110448_t fails validation.
(CAG)	 AG	12-21	GC	GGG
(GGG)	 AG	45-61	GT	GGG
(GGC)	 AG	83-136	GT	GGG
(GGT)	 AG	166-183	GT	GTG
(AGA)	 AG	282-364	GT	AGG
(CAC)	 AG	1087-1127	GT	AGG
-recovered GeneMark_model.110448_t, internal, 12, 21
-recovered GeneMark_model.110448_t, internal, 45, 61
-recovered GeneMark_model.110448_t, internal, 83, 136
-recovered GeneMark_model.110448_t, internal, 166, 183
-recovered GeneMark_model.110448_t, internal, 282, 364
-recovered GeneMark_model.110448_t, internal, 1087, 1127

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1185
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support