-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_259

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8576, 8695
Sorry, prediction GeneMark_model.107109_t fails validation.
(ATG)	 CT	8368-8372	GC	GAG
(AGA)	 AG	8544-8552	GC	GAG
(ACA)	 AG	8576-8695	GT	AGG
-recovered GeneMark_model.107109_t, initial, 8368, 8372
-recovered GeneMark_model.107109_t, internal, 8544, 8552
-recovered GeneMark_model.107109_t, internal, 8576, 8695
Couldn't classify 7034, 7095
Sorry, prediction snap_scaffold_259-snap.1-T1 fails validation.
(ATG)	 GG	1736-1867	GT	GGG
(GAA)	 AG	4152-4230	GT	AGG
(AAT)	 AG	7034-7095	GT	AGG
-recovered snap_scaffold_259-snap.1-T1, initial, 1736, 1867
-recovered snap_scaffold_259-snap.1-T1, internal, 4152, 4230
-recovered snap_scaffold_259-snap.1-T1, internal, 7034, 7095
Valid prediction for GeneMark_model.107107_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8761, 8781
Sorry, prediction GeneMark_model.107106_t fails validation.
(ATG)	 GC	7884-7894	GT	CTG
(GAG)	 AG	8161-8424	GT	GTG
(GAG)	 AG	8446-8451	GT	GAG
(AGA)	 AG	8475-8501	GT	GTG
(AGA)	 AG	8522-8542	GC	GAG
(GAG)	 AG	8578-8592	GT	GAG
(GAG)	 AG	8616-8621	GT	GAG
(AGA)	 AG	8645-8671	GT	GTG
(GGG)	 AG	8694-8732	GT	GAG
(GAG)	 AG	8761-8781	GT	GAG
-recovered GeneMark_model.107106_t, initial, 7884, 7894
-recovered GeneMark_model.107106_t, internal, 8161, 8424
-recovered GeneMark_model.107106_t, internal, 8446, 8451
-recovered GeneMark_model.107106_t, internal, 8475, 8501
-recovered GeneMark_model.107106_t, internal, 8522, 8542
-recovered GeneMark_model.107106_t, internal, 8578, 8592
-recovered GeneMark_model.107106_t, internal, 8616, 8621
-recovered GeneMark_model.107106_t, internal, 8645, 8671
-recovered GeneMark_model.107106_t, internal, 8694, 8732
-recovered GeneMark_model.107106_t, internal, 8761, 8781
Couldn't classify 388, 482
Sorry, prediction GlimmerHMM_glimmerT_61595-T1 fails validation.
(GAG)	 AG	388-482	GT	AGG
(CGT)	 AG	543-611	GA	AAG
-recovered GlimmerHMM_glimmerT_61595-T1, terminal, 543, 611
-recovered GlimmerHMM_glimmerT_61595-T1, internal, 388, 482
Couldn't classify 388, 482
Couldn't classify 2961, 3182
Sorry, prediction snap_scaffold_259-snap.2-T1 fails validation.
(GAG)	 AG	388-482	GT	AGG
(AAC)	 AG	2961-3182	GT	AAG
-recovered snap_scaffold_259-snap.2-T1, internal, 388, 482
-recovered snap_scaffold_259-snap.2-T1, internal, 2961, 3182
Valid prediction for GeneMark_model.107108_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7095, rend_intergenic: 5702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8883
-exon list size: 79


building trellis

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88.9    
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93.8    
95.1    
96.3    
97.5    
98.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7095, rend_intergenic: 5702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support