-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110445_t
add_exon() Sorry, GeneMark_model.110445_t 35-332-terminal-1 is invalid.
Couldn't classify 405, 543
Couldn't classify 869, 1001
Sorry, prediction Augustus_model.g42124.t1 fails validation.
(GGG)	 AG	405-543	GT	AAG
(CCT)	 AG	869-1001	GT	AGG
-recovered Augustus_model.g42124.t1, internal, 405, 543
-recovered Augustus_model.g42124.t1, internal, 869, 1001
Couldn't classify 869, 1001
Sorry, prediction GlimmerHMM_glimmerT_63157-T1 fails validation.
(ATG)	 AA	383-543	GT	AAG
(CCT)	 AG	869-1001	GT	AGG
-recovered GlimmerHMM_glimmerT_63157-T1, initial, 383, 543
-recovered GlimmerHMM_glimmerT_63157-T1, internal, 869, 1001
Couldn't classify 405, 543
Couldn't classify 869, 1001
Sorry, prediction snap_scaffold_2589-snap.1-T1 fails validation.
(GGG)	 AG	405-543	GT	AAG
(CCT)	 AG	869-1001	GT	AGG
-recovered snap_scaffold_2589-snap.1-T1, internal, 405, 543
-recovered snap_scaffold_2589-snap.1-T1, internal, 869, 1001

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 130
Sorry, prediction GeneMark_model.110446_t fails validation.
(AGA)	 AG	35-130	GT	AGG
(AGA)	 AG	157-231	GT	TCG
(ACA)	 AG	588-658	GT	AGG
(TTG)	 AG	681-787	AG	AGA
-recovered GeneMark_model.110446_t, terminal, 681, 787
-recovered GeneMark_model.110446_t, internal, 35, 130
-recovered GeneMark_model.110446_t, internal, 157, 231
-recovered GeneMark_model.110446_t, internal, 588, 658

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1187
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support