-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2587

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 47
Couldn't classify 1083, 1091
Sorry, prediction GeneMark_model.110442_t fails validation.
(AGG)	 AG	39-47	GT	GGG
(AGA)	 AG	89-97	GT	GAG
(AGA)	 AG	151-165	GT	GGG
(AGG)	 AG	201-209	GT	GGG
(GGG)	 AG	241-249	GT	GGG
(AGA)	 AG	291-299	GT	GAG
(AGA)	 AG	357-365	GT	GGG
(AGG)	 AG	430-438	GT	GGG
(AGG)	 AG	464-472	GT	GGG
(AGA)	 AG	503-511	GT	GGG
(AAA)	 AG	559-567	GT	AGG
(AGA)	 AG	593-607	GT	GGG
(GGG)	 AG	647-655	GT	GGG
(AGA)	 AG	685-693	GT	GGG
(GGG)	 AG	791-799	GT	GGG
(AAA)	 AG	823-843	GT	GGG
(AGA)	 AG	885-893	GT	GGG
(AGA)	 AG	919-933	GT	GGG
(AGA)	 AG	963-971	GT	GGG
(AGA)	 AG	995-1009	GT	GGG
(AGA)	 AG	1039-1053	GT	GGG
(AGA)	 AG	1083-1091	GT	GGG
-recovered GeneMark_model.110442_t, internal, 39, 47
-recovered GeneMark_model.110442_t, internal, 89, 97
-recovered GeneMark_model.110442_t, internal, 151, 165
-recovered GeneMark_model.110442_t, internal, 201, 209
-recovered GeneMark_model.110442_t, internal, 241, 249
-recovered GeneMark_model.110442_t, internal, 291, 299
-recovered GeneMark_model.110442_t, internal, 357, 365
-recovered GeneMark_model.110442_t, internal, 430, 438
-recovered GeneMark_model.110442_t, internal, 464, 472
-recovered GeneMark_model.110442_t, internal, 503, 511
-recovered GeneMark_model.110442_t, internal, 559, 567
-recovered GeneMark_model.110442_t, internal, 593, 607
-recovered GeneMark_model.110442_t, internal, 647, 655
-recovered GeneMark_model.110442_t, internal, 685, 693
-recovered GeneMark_model.110442_t, internal, 791, 799
-recovered GeneMark_model.110442_t, internal, 823, 843
-recovered GeneMark_model.110442_t, internal, 885, 893
-recovered GeneMark_model.110442_t, internal, 919, 933
-recovered GeneMark_model.110442_t, internal, 963, 971
-recovered GeneMark_model.110442_t, internal, 995, 1009
-recovered GeneMark_model.110442_t, internal, 1039, 1053
-recovered GeneMark_model.110442_t, internal, 1083, 1091

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1187
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support