-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2582

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2582-snap.1-T1
add_exon() Sorry, snap_scaffold_2582-snap.1-T1 684-985-terminal-1 is invalid.
Couldn't classify 40, 54
Sorry, prediction GeneMark_model.110438_t fails validation.
(AGA)	 AG	40-54	GC	GAG
(AGA)	 AG	148-339	GT	GAG
(GAC)	 AG	365-388	GT	GGG
(GGT)	 AG	638-760	GT	CTG
(GAG)	 AG	829-846	GC	AGG
(GAG)	 AG	872-916	GT	GGG
(AGA)	 AG	939-953	GT	GGG
(GAG)	 AG	976-985	AA	AGA
-recovered GeneMark_model.110438_t, terminal, 976, 985
-recovered GeneMark_model.110438_t, internal, 40, 54
-recovered GeneMark_model.110438_t, internal, 148, 339
-recovered GeneMark_model.110438_t, internal, 365, 388
-recovered GeneMark_model.110438_t, internal, 638, 760
-recovered GeneMark_model.110438_t, internal, 829, 846
-recovered GeneMark_model.110438_t, internal, 872, 916
-recovered GeneMark_model.110438_t, internal, 939, 953

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63155-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63155-T1 384-535-terminal-1 is invalid.
Couldn't classify 384, 531
Sorry, prediction Augustus_model.g42120.t1 fails validation.
(TGT)	 AG	384-531	GT	AGG
-recovered Augustus_model.g42120.t1, internal, 384, 531

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1190
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support