-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2581

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 215, 356
Couldn't classify 987, 1189
Sorry, prediction pasa_asmbl_34634.p2 fails validation.
(TAC)	 GG	215-356	GT	TGG
(GCA)	 AG	987-1189	C	CCC
Couldn't classify 214, 356
Couldn't classify 987, 1082
Sorry, prediction snap_scaffold_2581-snap.1-T1 fails validation.
(GTA)	 AG	214-356	GT	TGG
(GCA)	 AG	987-1082	GT	GTG
-recovered snap_scaffold_2581-snap.1-T1, internal, 214, 356
-recovered snap_scaffold_2581-snap.1-T1, internal, 987, 1082
Couldn't classify 183, 356
Couldn't classify 987, 1176
Sorry, prediction GeneMark_model.110437_t fails validation.
(CTC)	 AG	183-356	GT	TGG
(GCA)	 AG	987-1176	GC	CGG
-recovered GeneMark_model.110437_t, internal, 183, 356
-recovered GeneMark_model.110437_t, internal, 987, 1176
Couldn't classify 214, 356
Couldn't classify 987, 1190
Sorry, prediction Augustus_model.g42119.t1 fails validation.
(GTA)	 AG	214-356	GT	TGG
(GCA)	 AG	987-1190		CC
-recovered Augustus_model.g42119.t1, internal, 214, 356

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1190
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support