-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2578

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 208
Couldn't classify 454, 468
Sorry, prediction GeneMark_model.110435_t fails validation.
(AGG)	 AG	35-208	GT	GAG
(GGG)	 AG	234-254	GT	GGG
(AGA)	 AG	294-302	GT	GGG
(AGA)	 AG	324-347	GT	GGG
(ATG)	 AG	387-392	GT	GGG
(GGG)	 AG	418-432	GT	AAG
(AGG)	 AG	454-468	GT	GAG
-recovered GeneMark_model.110435_t, initial, 387, 392
-recovered GeneMark_model.110435_t, internal, 35, 208
-recovered GeneMark_model.110435_t, internal, 234, 254
-recovered GeneMark_model.110435_t, internal, 294, 302
-recovered GeneMark_model.110435_t, internal, 324, 347
-recovered GeneMark_model.110435_t, internal, 387, 392
-recovered GeneMark_model.110435_t, internal, 418, 432
-recovered GeneMark_model.110435_t, internal, 454, 468

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 476, 605
Couldn't classify 1026, 1090
Sorry, prediction snap_scaffold_2578-snap.1-T1 fails validation.
(CTG)	 AG	476-605	GT	TGG
(ACA)	 AG	1026-1090	GT	AGG
-recovered snap_scaffold_2578-snap.1-T1, internal, 476, 605
-recovered snap_scaffold_2578-snap.1-T1, internal, 1026, 1090

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1191
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support