-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2576

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 861, 1041
Sorry, prediction Augustus_model.g42118.t1 fails validation.
(ACT)	 AG	861-1041	GT	AGG
-recovered Augustus_model.g42118.t1, internal, 861, 1041
Valid prediction for GlimmerHMM_glimmerT_63153-T1
Couldn't classify 102, 119
Couldn't classify 861, 1041
Sorry, prediction GeneMark_model.110433_t fails validation.
(GAG)	 AG	102-119	GT	AAG
(GGT)	 AG	143-151	GT	AGG
(GAG)	 AG	177-194	GT	GAG
(CGA)	 AG	218-238	GT	GAG
(GAA)	 AG	266-283	GT	GTG
(TAA)	 AG	305-325	GT	AAG
(TGA)	 AG	349-369	GT	GAG
(CGA)	 AG	393-413	GT	AAG
(TAC)	 AG	447-475	GT	TAG
(ACT)	 AG	861-1041	GT	AGG
-recovered GeneMark_model.110433_t, internal, 102, 119
-recovered GeneMark_model.110433_t, internal, 143, 151
-recovered GeneMark_model.110433_t, internal, 177, 194
-recovered GeneMark_model.110433_t, internal, 218, 238
-recovered GeneMark_model.110433_t, internal, 266, 283
-recovered GeneMark_model.110433_t, internal, 305, 325
-recovered GeneMark_model.110433_t, internal, 349, 369
-recovered GeneMark_model.110433_t, internal, 393, 413
-recovered GeneMark_model.110433_t, internal, 447, 475
-recovered GeneMark_model.110433_t, internal, 861, 1041
Couldn't classify 861, 1041
Sorry, prediction snap_scaffold_2576-snap.1-T1 fails validation.
(ACT)	 AG	861-1041	GT	AGG
-recovered snap_scaffold_2576-snap.1-T1, internal, 861, 1041

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1193
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support