-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2575

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2575-snap.1-T1
Valid prediction for snap_scaffold_2575-snap.2-T1
add_exon() Sorry, snap_scaffold_2575-snap.2-T1 35-425-terminal-1 is invalid.
Couldn't classify 35, 69
Sorry, prediction GeneMark_model.110432_t fails validation.
(CTC)	 AG	35-69	GT	GAG
(AGG)	 AG	165-203	GT	AGG
(AAG)	 AG	225-338	GC	CGG
(AGG)	 AG	361-396	GT	GGG
(AGG)	 AG	418-426	GT	AGG
(GAG)	 AG	754-961	AA	GAA
-recovered GeneMark_model.110432_t, terminal, 754, 961
-recovered GeneMark_model.110432_t, internal, 35, 69
-recovered GeneMark_model.110432_t, internal, 165, 203
-recovered GeneMark_model.110432_t, internal, 225, 338
-recovered GeneMark_model.110432_t, internal, 361, 396
-recovered GeneMark_model.110432_t, internal, 418, 426

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1194
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support