-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2573

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 43
Sorry, prediction GeneMark_model.110431_t fails validation.
(AGA)	 AG	38-43	GT	AGG
(AGA)	 AG	65-70	GT	AGG
(AGA)	 AG	92-97	GT	AGG
(AGA)	 AG	119-124	GT	AGG
(AGA)	 AG	146-151	GT	AGG
(ACA)	 AG	192-203	GT	AGG
(AGA)	 AG	225-230	GT	AGG
(AGA)	 AG	252-257	GT	AGG
(AGA)	 AG	279-284	GT	AGG
(AGG)	 AG	308-364	GT	AGG
(AGA)	 AG	386-391	GT	AGG
(AGA)	 AG	413-418	GT	AGG
(AGA)	 AG	440-445	GT	AGG
(AGA)	 AG	470-475	GT	AGG
(AGA)	 AG	499-526	GG	AGG
-recovered GeneMark_model.110431_t, terminal, 499, 526
-recovered GeneMark_model.110431_t, internal, 38, 43
-recovered GeneMark_model.110431_t, internal, 65, 70
-recovered GeneMark_model.110431_t, internal, 92, 97
-recovered GeneMark_model.110431_t, internal, 119, 124
-recovered GeneMark_model.110431_t, internal, 146, 151
-recovered GeneMark_model.110431_t, internal, 192, 203
-recovered GeneMark_model.110431_t, internal, 225, 230
-recovered GeneMark_model.110431_t, internal, 252, 257
-recovered GeneMark_model.110431_t, internal, 279, 284
-recovered GeneMark_model.110431_t, internal, 308, 364
-recovered GeneMark_model.110431_t, internal, 386, 391
-recovered GeneMark_model.110431_t, internal, 413, 418
-recovered GeneMark_model.110431_t, internal, 440, 445
-recovered GeneMark_model.110431_t, internal, 470, 475

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1194
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support