-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_257

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8921, 8959
Sorry, prediction GeneMark_model.107101_t fails validation.
(ATG)	 GC	8632-8642	GT	GGG
(AGA)	 AG	8732-8890	GT	GAG
(AAG)	 AG	8921-8959	GT	GAG
-recovered GeneMark_model.107101_t, initial, 8632, 8642
-recovered GeneMark_model.107101_t, internal, 8732, 8890
-recovered GeneMark_model.107101_t, internal, 8921, 8959

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 914, 986
Sorry, prediction snap_scaffold_257-snap.3-T1 fails validation.
(AGC)	 AG	914-986	GT	GGG
(CGG)	 AG	1818-2027	CT	GAC
-recovered snap_scaffold_257-snap.3-T1, terminal, 1818, 2027
-recovered snap_scaffold_257-snap.3-T1, internal, 914, 986
Valid prediction for snap_scaffold_257-snap.2-T1
Valid prediction for snap_scaffold_257-snap.1-T1
Valid prediction for GeneMark_model.107099_t
Valid prediction for Augustus_model.g40954.t1
Valid prediction for GlimmerHMM_glimmerT_61592-T1
Valid prediction for Augustus_model.g40955.t1
Valid prediction for pasa_asmbl_34631.p1
Couldn't classify 914, 986
Sorry, prediction GlimmerHMM_glimmerT_61593-T1 fails validation.
(AGC)	 AG	914-986	GT	GGG
(ATG)	 AG	2302-3024	GA	AAG
-recovered GlimmerHMM_glimmerT_61593-T1, terminal, 2302, 3024
-recovered GlimmerHMM_glimmerT_61593-T1, internal, 914, 986
Valid prediction for GeneMark_model.107100_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8985
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support